PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g06530.1
Common NameLR48_Vigan401s001300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 212aa    MW: 23770.2 Da    PI: 9.6746
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g06530.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.81e-28136192257
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 
                     +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers+ dp v+++tY+ eH 
  Vang07g06530.1 136 SDPWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKHVERSHLDPGVFIVTYTAEHS 192
                     799************************998**************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28122193IPR003657WRKY domain
SuperFamilySSF1182901.57E-24129193IPR003657WRKY domain
PROSITE profilePS5081129.723130192IPR003657WRKY domain
SMARTSM007743.8E-33135196IPR003657WRKY domain
PfamPF031061.2E-23137192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
LEELARGMAW DLHAIVGCTI APATIMDNPN LILSQHFCAE QDDLLCNFQE FSETKTVLDE  60
LEEIYKPFYP QFRNSSIISS SQPVPDKTVK KLKPSNKVDV QAQDLHDTAV SKCRKSKKKL  120
KSKRVVKHMT AADGVSDPWA WRKYGQKPIK GSPYPRSYYR CSSSKGCLAR KHVERSHLDP  180
GVFIVTYTAE HSPHQARKNS TSTIAPPPTT K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-19122191169WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang07g06530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017407199.11e-152PREDICTED: probable WRKY transcription factor 29
TrEMBLA0A0L9T9511e-151A0A0L9T951_PHAAN; Uncharacterized protein
STRINGXP_007158533.11e-112(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.15e-22WRKY family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]