PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0795s00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GRF | ||||||||
Protein Properties | Length: 280aa MW: 30468.6 Da PI: 6.6017 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 44.1 | 3.6e-14 | 107 | 132 | 1 | 26 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkk 26 d+epgrCrRtDGKkWRCsr+v++g++ Vang0795s00010.1 107 DPEPGRCRRTDGKKWRCSRDVVAGQN 132 79********************9985 PP | |||||||
2 | QLQ | 29.3 | 2.8e-11 | 72 | 94 | 1 | 23 |
QLQ 1 saFTaaQlqlLksQilAyKyLaa 23 s+F+ +Q+q+L+ Q+l+++y++a Vang0795s00010.1 72 SYFSLSQWQELELQALIFRYMLA 94 78*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08880 | 4.9E-6 | 73 | 94 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 14.246 | 107 | 154 | IPR014977 | WRC domain |
Pfam | PF08879 | 9.3E-11 | 108 | 131 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MDLHLKQWRN QHESEEQHST KMPKLLPESH QQPQTQSSAS ALPLFVPEPN SKVSTLSDST 60 LPATNRFPRM GSYFSLSQWQ ELELQALIFR YMLAVLQSGY WGRGAMDPEP GRCRRTDGKK 120 WRCSRDVVAG QNSSGTKNED KSLFENEDNV GGDGRAGGHM LRHFFDDWPR SMQHSDNVEN 180 NAAPARINSS TCLSISMPGN ASSDVSLKLS TGPTNENVNL QSDQLQLNWA GGWAGGSQVA 240 SVGGPLAEAL RSSTSTSSPT SVLHHLPPAS GSETSFVTT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0795s00010.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014495385.1 | 1e-159 | growth-regulating factor 3 | ||||
Swissprot | Q8L8A7 | 9e-33 | GRF4_ARATH; Growth-regulating factor 4 | ||||
TrEMBL | A0A1S3TNL0 | 1e-157 | A0A1S3TNL0_VIGRR; growth-regulating factor 3 | ||||
STRING | GLYMA19G37740.3 | 1e-109 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7895 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 7e-35 | growth-regulating factor 4 |
Publications ? help Back to Top | |||
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