PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g17850.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 472aa MW: 52126.4 Da PI: 8.7497

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g17850.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Vang06g17850.1 6 FVCEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	13.1	0.00029	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Vang06g17850.1 82 WKCDKCSKRYAVQSDWKAHHKTC 104 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.64E-7	5	28	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-5	5	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	6	28	IPR007087	Zinc finger, C2H2
Pfam	PF12171	7.4E-5	6	28	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	6	28	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	75	47	77	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.4E-5	70	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.64E-7	77	102	No hit	No description
SMART	SM00355	120	82	102	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRASN EVKKRVYVCP EPSCVHHNPA 60 RALGDLTGIK KHYSRKHGEK KWKCDKCSKR YAVQSDWKAH HKTCGTREYK CDCGTIFARR 120 DSFITHRAFC DALTEENNRV NPSLTSGTGM TPSLQNELQE LMATMPLSTS SNNAVPEFNN 180 SYESSKSPLK SLSQEHLVPM PFKSMSMRGC MSSTTSGTLF GGPKNMSLPL SSTLQLSSNN 240 SHTFNYFQDS KNSAASAHMS ATALLQKAAQ MGAAASNNTI NSSPTMMQKS FVSGIIGPHP 300 NHSPSSYDPF HHPDPHPDDQ SHMSGIRDAG AFTNQFVHKG QQEMSAMLDS NTSDMGIFGA 360 MFMGSDHNQG VMKNVEQEVG ASSSSFIRRR DVSEGNPTGA SRFGGADMTM IHDFLGVGGA 420 TSRAGSLHEP QKQQQSLELE ALTHQRLQMI NHFHHHLPHG DSAMEKSVWD I*

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRASN EVKKRVYVCP EPSCVHHNPA  60
RALGDLTGIK KHYSRKHGEK KWKCDKCSKR YAVQSDWKAH HKTCGTREYK CDCGTIFARR  120
DSFITHRAFC DALTEENNRV NPSLTSGTGM TPSLQNELQE LMATMPLSTS SNNAVPEFNN  180
SYESSKSPLK SLSQEHLVPM PFKSMSMRGC MSSTTSGTLF GGPKNMSLPL SSTLQLSSNN  240
SHTFNYFQDS KNSAASAHMS ATALLQKAAQ MGAAASNNTI NSSPTMMQKS FVSGIIGPHP  300
NHSPSSYDPF HHPDPHPDDQ SHMSGIRDAG AFTNQFVHKG QQEMSAMLDS NTSDMGIFGA  360
MFMGSDHNQG VMKNVEQEVG ASSSSFIRRR DVSEGNPTGA SRFGGADMTM IHDFLGVGGA  420
TSRAGSLHEP QKQQQSLELE ALTHQRLQMI NHFHHHLPHG DSAMEKSVWD I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	78	141	3	66	Zinc finger protein JACKDAW
5b3h_F	1e-34	78	141	3	66	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g17850.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017414167.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	2e-95	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A0S3SS90	0.0	A0A0S3SS90_PHAAN; Uncharacterized protein
STRING	XP_007163889.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2192	30	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-93	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]