PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g12780.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 1121aa MW: 125876 Da PI: 9.1315

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g12780.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.2	5e-10	90	126	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++eE e++++a +++G++ Wk++a + +Rt +++ Vang06g12780.1 90 QWSKEELERFYEAYRMYGKD-WKKVAGVVR-NRTTEMVE 126 6***************99.*****.*99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.66E-11	85	134	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.386	86	137	IPR017884	SANT domain
SMART	SM00717	7.3E-6	87	135	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-5	89	131	IPR009057	Homeodomain-like
Pfam	PF00249	1.6E-8	90	130	IPR001005	SANT/Myb domain
CDD	cd00167	7.03E-6	91	125	No hit	No description
SMART	SM01135	6.1E-52	619	720	IPR033471	DIRP domain
Pfam	PF06584	4.3E-30	619	719	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1121 aa Download sequence Send to blast
LLLSFSSSSI VLQRNRNPMR GTNIVDCGFG FRFNDIRAQW HQQGNLEVLI SGFQVQMILL 60 RKMELIQIKT SNGYQYKYVK KKLTDKLGSQ WSKEELERFY EAYRMYGKDW KKVAGVVRNR 120 TTEMVEALYN MNRREKVQLS VSKDQSHSIA ASDGCLSLLK KRRLDGMVPH AVGKRTPRVP 180 VSYSYKKEYT ENYVSPYRRS LKSTTDANDD EVAHVVALAL TEAAQRGGGS PQVSQSPCRR 240 ADQKPSPVLR WERKQQLSET ARAKLHNLSV DEELLDGSIE SRGADNGEYA RDNSSLIDME 300 GTGTVEVLQK GGKFYRKKER VKNVGNHQLD DGGEACSGTE EGLSCSLKEM VDIEVTNEKL 360 EKFSPKGGRK RNKKLFFGDE TPALNALQTL ADLSLMMPIS TVDSESSIQL KGDRISADKD 420 GKSALPEATL TSHKRHKLKH SVVPEIEVST SKKSKLGKES TKDTNVLSES KEQLPFADAT 480 WKRKRKSVVA NAKLDSCPSG PLKDEALDDE KKPVVKGKHG DQVFTLPKQL KTVKSSESSL 540 CIDQKETGPM AEIPLLNEVS LPTKRSRRKM NLQRTFSAKE KSSDSILKSQ ANKHSDLKEK 600 LSSCLSSNMV RRWFIFEWFY SAIDYPWFAK RELMEYLNHV GLGNIPRLTR VEWSVVRGSL 660 GKPRRLSEHF LRDERQKLAE YRESVRKHYA ELRTGIRDGL PTDLARPLCV GQRVIAIHPK 720 TREIHDGSVL TVDYDKCRIQ FDRPELGVEF VMDIDCMPFN PLDNMPEALR RHIDDRKGSF 780 MPIEPHINGN SHFGGCENHS SPLKVHTSSS ALVMHGKATV ATMDNLCAQA GCVQPCKVTH 840 HQAREADIHA LSELKRALDK KETLLMELRS SNSDILENQN GIECLNDSEV FKKHYATVSD 900 AMLQLRQRNT YRGNSLPPWM KPQTGFSVHD DLPSMLDGSL TQEFGSTVVQ IIKGSRSRAH 960 AMVDAAFKAL TLTKEGEDGF VKIGQALDSI NHQQLASKSR LPVIRSQEQV NANGSFYHVN 1020 NSTCSVSESI TNDPSGAKLH NYSEKFDTEL PSDLITSCVA TLIMIQTCTE RQYPPADVAQ 1080 ILDSAVSSLH PCCPQNLPIY REIQMCMGRI KTQILALIPT *

Sequence ? help Back to Top

Protein Sequence Length: 1121 aa Download sequence Send to blast

LLLSFSSSSI VLQRNRNPMR GTNIVDCGFG FRFNDIRAQW HQQGNLEVLI SGFQVQMILL  60
RKMELIQIKT SNGYQYKYVK KKLTDKLGSQ WSKEELERFY EAYRMYGKDW KKVAGVVRNR  120
TTEMVEALYN MNRREKVQLS VSKDQSHSIA ASDGCLSLLK KRRLDGMVPH AVGKRTPRVP  180
VSYSYKKEYT ENYVSPYRRS LKSTTDANDD EVAHVVALAL TEAAQRGGGS PQVSQSPCRR  240
ADQKPSPVLR WERKQQLSET ARAKLHNLSV DEELLDGSIE SRGADNGEYA RDNSSLIDME  300
GTGTVEVLQK GGKFYRKKER VKNVGNHQLD DGGEACSGTE EGLSCSLKEM VDIEVTNEKL  360
EKFSPKGGRK RNKKLFFGDE TPALNALQTL ADLSLMMPIS TVDSESSIQL KGDRISADKD  420
GKSALPEATL TSHKRHKLKH SVVPEIEVST SKKSKLGKES TKDTNVLSES KEQLPFADAT  480
WKRKRKSVVA NAKLDSCPSG PLKDEALDDE KKPVVKGKHG DQVFTLPKQL KTVKSSESSL  540
CIDQKETGPM AEIPLLNEVS LPTKRSRRKM NLQRTFSAKE KSSDSILKSQ ANKHSDLKEK  600
LSSCLSSNMV RRWFIFEWFY SAIDYPWFAK RELMEYLNHV GLGNIPRLTR VEWSVVRGSL  660
GKPRRLSEHF LRDERQKLAE YRESVRKHYA ELRTGIRDGL PTDLARPLCV GQRVIAIHPK  720
TREIHDGSVL TVDYDKCRIQ FDRPELGVEF VMDIDCMPFN PLDNMPEALR RHIDDRKGSF  780
MPIEPHINGN SHFGGCENHS SPLKVHTSSS ALVMHGKATV ATMDNLCAQA GCVQPCKVTH  840
HQAREADIHA LSELKRALDK KETLLMELRS SNSDILENQN GIECLNDSEV FKKHYATVSD  900
AMLQLRQRNT YRGNSLPPWM KPQTGFSVHD DLPSMLDGSL TQEFGSTVVQ IIKGSRSRAH  960
AMVDAAFKAL TLTKEGEDGF VKIGQALDSI NHQQLASKSR LPVIRSQEQV NANGSFYHVN  1020
NSTCSVSESI TNDPSGAKLH NYSEKFDTEL PSDLITSCVA TLIMIQTCTE RQYPPADVAQ  1080
ILDSAVSSLH PCCPQNLPIY REIQMCMGRI KTQILALIPT *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	367	374	GRKRNKKL
2	562	569	TKRSRRKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g12780.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017439880.1	0.0	PREDICTED: protein ALWAYS EARLY 2 isoform X5
TrEMBL	A0A0L9VJY2	0.0	A0A0L9VJY2_PHAAN; Uncharacterized protein
STRING	XP_007144725.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding