PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g04690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 784aa MW: 85573.4 Da PI: 5.4195 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.3 | 5.3e-08 | 89 | 115 | 29 | 56 |
HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 29 ereeLAkklgLterqVkvWFqNrRakek 56 +++eL ++lgL+ +qVk+WFqNrR+++k Vang06g04690.1 89 QIQEL-ESLGLENKQVKFWFQNRRTQMK 115 66666.789****************999 PP | |||||||
2 | START | 158.9 | 4e-50 | 270 | 519 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 la++a++el+k+ +ae+p+W ks e n +e+ + f++ + + +ea r++g+v+ ++ lve+l+d + +W e+++ +a l+ Vang06g04690.1 270 LALAAMEELLKMTQAESPLWIKSLdgekEVFNHEEYARLFSPCIGpkptgYVTEATRETGIVIINSLALVETLMDAN-RWAEMFPsmiaRAINLD 363 6899********************876666688999999999888********************************.*******99999999** PP EECTT...............................EEEE.EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE- CS START 84 vissg...............................galq.lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRa 145 vis+g ++ +m ae q+lsplvp R + f+R+++q+ +g+w++vdvS+d+ + + ++++ + Vang06g04690.1 364 VISNGmggtrngalqvvgffavymldfvlivagtddQDYSfQMHAEVQLLSPLVPvRQVRFIRFCKQHAEGVWAVVDVSIDVGHDAANAQPFMSC 458 *********************************99955552788999**************************************999******* PP EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 146 ellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++lpSg+++++++ng+skvtw+eh++++++ +h+l+r+l++sg+ +ga +w atlqrqce+ Vang06g04690.1 459 RRLPSGCIVQDMPNGYSKVTWLEHWEYDESGVHQLYRPLLSSGVGFGAHRWIATLQRQCEC 519 ***********************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-10 | 63 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.009 | 77 | 121 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.62E-7 | 78 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-6 | 83 | 121 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.5E-5 | 89 | 115 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 10.139 | 94 | 117 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 39.428 | 260 | 522 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.42E-29 | 262 | 370 | No hit | No description |
CDD | cd08875 | 1.16E-113 | 264 | 518 | No hit | No description |
SMART | SM00234 | 1.4E-23 | 269 | 519 | IPR002913 | START domain |
Pfam | PF01852 | 5.5E-41 | 270 | 519 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.42E-29 | 404 | 519 | No hit | No description |
SuperFamily | SSF55961 | 2.75E-21 | 547 | 777 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 784 aa Download sequence Send to blast |
LIIISQSISS SMQNSSSFSY SNQRKMEGPS EMGLIGENFD AGLMGRMRDD EYESRSGSDN 60 FDGVSGDDQD GGDDQPQRKK RYHRHTPHQI QELESLGLEN KQVKFWFQNR RTQMKTQLER 120 HENIMLRQEN DKLRAENSLM KEAMSNPVCN SCGGPAIPGQ ISFEEHQIRI ENARLKDELN 180 RICALANKFL GKPISSMTGP MALPTSNSGL ELGIGRSGLG GSSTLGTPLP MGLDLGDGVL 240 GTQTGMPGIR PSLGLMGNEV QLERSMLIDL ALAAMEELLK MTQAESPLWI KSLDGEKEVF 300 NHEEYARLFS PCIGPKPTGY VTEATRETGI VIINSLALVE TLMDANRWAE MFPSMIARAI 360 NLDVISNGMG GTRNGALQVV GFFAVYMLDF VLIVAGTDDQ DYSFQMHAEV QLLSPLVPVR 420 QVRFIRFCKQ HAEGVWAVVD VSIDVGHDAA NAQPFMSCRR LPSGCIVQDM PNGYSKVTWL 480 EHWEYDESGV HQLYRPLLSS GVGFGAHRWI ATLQRQCECL AILMSSSISS DDHTALSQAG 540 RRSMLKLAQR MTSNFCSGVC ASSARKWDML HIGTLGDDMK VMTRKNVDDP GEPPGIVLSA 600 ATSVWMPVSR QRVFDFLRDE RLRSEWDILS NGGPMQEMVH IAKGQGHGNC VSLLRANAVN 660 ANDSSMLILQ ETWMDASCSV VVYAPVDVQS LNVVMSGGDS AYVALLPSGF AIVPDGHCNN 720 STCNGTMQKG GGGEDSGGSL LTVGFQILVN SLPTAKLTVE SVDTVNNLIS CTIQKIKGAL 780 RVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g04690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017415466.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A0S3SN04 | 0.0 | A0A0S3SN04_PHAAN; Uncharacterized protein | ||||
STRING | XP_007143378.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1192 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 0.0 | homeodomain GLABROUS 1 |
Publications ? help Back to Top | |||
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