PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g00520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 271aa MW: 30670.2 Da PI: 6.2418 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.7 | 6.3e-14 | 152 | 196 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky Vang06g00520.1 152 PWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKY 196 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.388 | 40 | 94 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.09E-10 | 42 | 93 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-4 | 44 | 96 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-4 | 44 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.68E-5 | 47 | 90 | No hit | No description |
PROSITE profile | PS51294 | 20.673 | 145 | 201 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.81E-17 | 146 | 201 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-17 | 148 | 200 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.3E-11 | 149 | 199 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-11 | 149 | 195 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.9E-12 | 152 | 196 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.53E-9 | 152 | 197 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
LEHETRPLEK QILTLFIVFN STENTTPTMF HESSVTRWQP QPVQPTEWTR YHDKLFERAL 60 LLVPEDLPDR WNQIAVHVPG KTPAEVREHY DALVHDVFEI DSGRVEVPSY VDDLAPPQLS 120 GGAGNSAWDS ANQISFGSKP KQGETERKKG TPWTEEEHRL FLIGLSKFGK GDWRSISRNV 180 VVTRTPTQVA SHAQKYFLRQ NSGKKERKRS SIHDITTVDS NSLPVPIDQN WVPPPGTSMQ 240 QSSQDMLSYA SSSMQDQMGP FGYSNYGFEM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-14 | 48 | 110 | 11 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g00520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413455.1 | 0.0 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 2e-61 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0L9U1R5 | 1e-180 | A0A0L9U1R5_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SLK8 | 1e-180 | A0A0S3SLK8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007142868.1 | 1e-165 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6068 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 2e-80 | MYB family protein |
Publications ? help Back to Top | |||
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