PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0615s00080.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 300aa    MW: 33308.1 Da    PI: 7.7208
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0615s00080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.39.6e-20130176148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g WT+eEd +lv++vkq+G+g W+ Ia+++  gR +kqc++rw+++l
  Vang0615s00080.1 130 KGQWTEEEDRKLVKLVKQHGTGKWSQIAEKLD-GRAGKQCRERWHNHL 176
                       799*****************************.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.787125180IPR017930Myb domain
SMARTSM007171.6E-17129178IPR001005SANT/Myb domain
SuperFamilySSF466891.24E-19130209IPR009057Homeodomain-like
PfamPF002495.3E-18130176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-25131185IPR009057Homeodomain-like
CDDcd001678.49E-17133176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MKDIGGGGAI IPVNGSNPSK SSVGPPLTAI ERFLWGQQSH SSQQQPQNVA NNIHASVLDG  60
FGGSNYNIFW HNGGREVNFV EKLLANEVEG LNWTQQVPPL CLKEDLLVSG KNRKGVGRKP  120
KEGSSVPWIK GQWTEEEDRK LVKLVKQHGT GKWSQIAEKL DGRAGKQCRE RWHNHLRPDI  180
KLSDIATNSN FSLMSETYDD EISFMQQFFD ENNVIAESVK QTKTLNNSSA GFNGYHHQSS  240
NNSQFLTELT QSGSVVHSNS QMSFDESLFL SKRTPIGFDV CLSHGTAKQN WLWERGIGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-18129183660B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0615s00080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434646.11e-166PREDICTED: transcription factor MYB48-like
TrEMBLA0A1S3VGF51e-135A0A1S3VGF5_VIGRR; transcription factor MYB119-like
STRINGXP_007146726.11e-122(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.15e-29myb domain protein 119