PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0613s00040.1 | ||||||||
Common Name | LR48_Vigan08g000200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 195aa MW: 22351.3 Da PI: 6.9468 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.4 | 1.1e-15 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ede+l+++ G g+W+ Iar g+ R++k+c++rw +yl Vang0613s00040.1 21 KGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 68 678*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.202 | 16 | 72 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-21 | 19 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-12 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 21 | 68 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.27E-18 | 23 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.26E-11 | 24 | 68 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.6E-5 | 68 | 92 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MRKPDLMANK DRMKDIIKLR KGLWSPDEDE KLIRYMLTNG QGCWSDIARN AGLQRCGKSC 60 RLRWINYLRP DLKRGAFSSQ EQHLIFHLHS IFEIFTCMED GHQVNHGTLE ANNKMGLGRD 120 FSLPSLESRS IESDSVPIDV KSHNNHFNYG SFNNTDNIQG SKLEDLIGFA NHGQGELYLE 180 NLMQNITSFP FLDF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0613s00040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-165 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432815.1 | 5e-67 | PREDICTED: transcription factor MYB46-like | ||||
TrEMBL | A0A0L9V225 | 1e-65 | A0A0L9V225_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA12G36630.1 | 1e-51 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF774 | 34 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 9e-49 | myb domain protein 83 |
Publications ? help Back to Top | |||
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