PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g02710.2
Common NameLR48_Vigan09g029900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family BBR-BPC
Protein Properties Length: 345aa    MW: 38132.4 Da    PI: 9.9562
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g02710.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind409.93.1e-12583441301
       GAGA_bind   1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 
                     mdd g+re  r+k+ +y++a  + l +++   +q+m+++aerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erdn++++l+++e
  Vang05g02710.2   8 MDDAGHREngRHKAdQYKSAqgQWLMQHQpsMKQIMAIMAERDAAIQERNLAISEKKAAYAERDMAFLQRDAAIAERNNAILERDNAIATLQYRE 102
                     9*****999*****9***655544444432146************************************************************** PP

       GAGA_bind  89 nsla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
                     +s+     s++p+g+q+++g+k+i++ qq +++ p+++d+++ +re+++++alp   aa+ ++e+ k+   +rak+pke+k+++++kk++k  kk
  Vang05g02710.2 103 TSIGsgsmSSCPPGCQISRGVKHIHHPQQqVHHiPNMGDPSYSTREMHTTDALP---AAPITSEAGKS---RRAKRPKEPKSTSPNKKTPKAAKK 191
                     *98788889******************9955669******************99...44555555444...4788999999999999999999** PP

       GAGA_bind 178 vkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyP 243
                     vkkes+d +                             ska++k +dl+ln+v++Dest+P+PvCsCtG+l+qCYkWGnGGWqSaCCttt+S+yP
  Vang05g02710.2 192 VKKESEDLNkvmfgkahewkngqemvnggddlnkqlvvSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLKQCYKWGNGGWQSACCTTTLSMYP 286
                     *****995559************************************************************************************ PP

       GAGA_bind 244 LPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     LP+++++r+aR++grKmS++af+klL++LaaeG+dlsnpvDLkdhWAkHGtn+++ti+
  Vang05g02710.2 287 LPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 344
                     *********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.3E-1778344IPR010409GAGA-binding transcriptional activator
PfamPF062171.1E-1078344IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
LQPVVFLMDD AGHRENGRHK ADQYKSAQGQ WLMQHQPSMK QIMAIMAERD AAIQERNLAI  60
SEKKAAYAER DMAFLQRDAA IAERNNAILE RDNAIATLQY RETSIGSGSM SSCPPGCQIS  120
RGVKHIHHPQ QQVHHIPNMG DPSYSTREMH TTDALPAAPI TSEAGKSRRA KRPKEPKSTS  180
PNKKTPKAAK KVKKESEDLN KVMFGKAHEW KNGQEMVNGG DDLNKQLVVS KADWKGQDLG  240
LNQVAYDEST MPAPVCSCTG VLKQCYKWGN GGWQSACCTT TLSMYPLPAV PNKRHARVGG  300
RKMSGSAFNK LLSRLAAEGH DLSNPVDLKD HWAKHGTNRY ITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g02710.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017436624.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_017436625.10.0PREDICTED: protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-163BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A0L9V9700.0A0A0L9V970_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RAS60.0A0A0S3RAS6_PHAAN; Uncharacterized protein
STRINGGLYMA04G02860.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69053449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-143basic pentacysteine 6
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]