PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang05g02650.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 319aa MW: 36811.1 Da PI: 9.3008 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.1 | 1.3e-29 | 62 | 112 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrng++KKA+EL vLCda+v++i+fsstgkl+ey+s Vang05g02650.2 62 KRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYIS 112 79***********************************************86 PP | |||||||
2 | K-box | 86.7 | 4.8e-29 | 162 | 260 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yq + g++l+++++e++q++l+kLk+ ++nL++e+R+++G++L +L++++L+ Le++++k+ k +R++K++++++qi++++kk ++ +e +++L Vang05g02650.2 162 YQMTLGVDLWNSHYENMQENLKKLKEVNKNLRKEIRQRMGDCLIDLNMEDLKLLEDEMDKAAKIVRERKYKVITNQIDTQRKKFNNEKEVHNRLL 256 67788999*************************************************************************************99 PP K-box 96 kkle 99 + l+ Vang05g02650.2 257 RDLD 260 8875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.408 | 54 | 114 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.8E-41 | 54 | 113 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.11E-36 | 55 | 115 | No hit | No description |
PRINTS | PR00404 | 9.7E-29 | 56 | 76 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.97E-30 | 56 | 118 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 56 | 110 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-25 | 63 | 110 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-29 | 76 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-29 | 91 | 112 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.3E-17 | 173 | 258 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.233 | 175 | 265 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MHLPPPSLCI SLSLINSLSY SCSYYHSEFP EEADRKEQKH KHKEAEADTA TTAMARGKIQ 60 IKRIENTTNR QVTYSKRRNG LFKKANELTV LCDAKVSIIM FSSTGKLHEY ISPSTSYVFA 120 FSSLLFSSIQ FPNKPYLPTY LSIYLLSRVL FFSRTKHFFD QYQMTLGVDL WNSHYENMQE 180 NLKKLKEVNK NLRKEIRQRM GDCLIDLNME DLKLLEDEMD KAAKIVRERK YKVITNQIDT 240 QRKKFNNEKE VHNRLLRDLD ARAEDPRFAL IENAGGEYDS VIGFSNLGPR MFALSLQPSH 300 PSAHSGPTSD LTTYPLLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-15 | 54 | 119 | 1 | 66 | MEF2C |
5f28_B | 2e-15 | 54 | 119 | 1 | 66 | MEF2C |
5f28_C | 2e-15 | 54 | 119 | 1 | 66 | MEF2C |
5f28_D | 2e-15 | 54 | 119 | 1 | 66 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang05g02650.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435663.1 | 0.0 | PREDICTED: floral homeotic protein DEFICIENS | ||||
Swissprot | P23706 | 2e-99 | DEFA_ANTMA; Floral homeotic protein DEFICIENS | ||||
TrEMBL | A0A0S3RAE8 | 0.0 | A0A0S3RAE8_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA06G02990.1 | 1e-148 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2735 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 1e-73 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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