PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g17760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 855aa MW: 92019 Da PI: 7.9533 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.5 | 7.5e-16 | 637 | 683 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq Vang04g17760.1 637 VHNLSERRRRDRINEKMRALQELVPNC-----NKADKASMLDEAIEYLKTLQ 683 5*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51375 | 8.583 | 94 | 128 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.46 | 96 | 125 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 6.39 | 159 | 189 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF01535 | 0.0034 | 164 | 184 | IPR002885 | Pentatricopeptide repeat |
Pfam | PF13041 | 1.9E-13 | 190 | 235 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 12.364 | 190 | 224 | IPR002885 | Pentatricopeptide repeat |
TIGRFAMs | TIGR00756 | 1.1E-8 | 192 | 226 | IPR002885 | Pentatricopeptide repeat |
PROSITE profile | PS51375 | 5.272 | 225 | 259 | IPR002885 | Pentatricopeptide repeat |
Gene3D | G3DSA:4.10.280.10 | 1.2E-20 | 630 | 691 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-20 | 631 | 694 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.266 | 633 | 682 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.20E-17 | 636 | 687 | No hit | No description |
Pfam | PF00010 | 2.9E-13 | 637 | 683 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-17 | 639 | 688 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 855 aa Download sequence Send to blast |
MIIMKLASLI RSSSNQNGVP NLHWFSSVPD IKLHLDKAAK LKNLKHATQI HSQIVTTNQA 60 SLGNINSLLV VYAKCGSIKH AVLLFGTSPG ASTSVVTWTT LITQLSHFNK PFQALTSFNL 120 MRTTGIYPNH VLSACAGLVE LGFGKQVHGS IVKRGLVGLV YVKNSLVDMY CKCGLFEDAT 180 KLFCGGGERD VVTWNVMITG CVHSQNFEQA CTFFQAMIRE GVEPDEASYS SLLHASASIA 240 ALAQGSLIHC HVLKTGHMKN ACVSSSLVTM RSGFLPILET SINCKGDLIP KEMNNNTCAA 300 DQSYTSNNDL FELVWEKGQI SMQGQSFRAR KSPNCRTLPS HCLPSHTPLG GYAKDNNTTI 360 TRMGNSEFFN ELCGVTMNEP SASNGFSLLD RRNSCSKVFR DTHKNTPFAS VRSKIVDIAE 420 NNTNNVPSPS SGFSGLKMEK QGSVACSNSS TMMNFSHFAK PVAIVKANLE NIGLASRSGS 480 VGIKIKGVAA TVATNPAEST KVELFGEFSK KAGTQSHQVT EPKPLEQDGA VSTKCDPSCK 540 DVCRIDDTSN LVVGESVNKG KEAVEKNVEP AVVSSSVCSG NGAERGSKDP NQNLKRKSID 600 TDDFESQSED VEEESVGVEK EVPAPQIGAK RHRSAEVHNL SERRRRDRIN EKMRALQELV 660 PNCNKADKAS MLDEAIEYLK TLQLQLQVMS MGTGLCMPAM MLPPGIQHMH AAHMGPFCPI 720 GVGMQMRLRV GCGMGMIDGN DETSGFPMAH VAQMQGAKLP IAHAPGSTAL HGMPNGQVFG 780 VLSQGHHMPM PHAPIFSFPG ESFMEPSTLG LNACGTALTE NVGSVSACNL KDPMPHVNSQ 840 HAQNTNIPDV NTRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5iww_D | 5e-45 | 20 | 272 | 12 | 337 | PLS9-PPR |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 641 | 646 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g17760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017417264.1 | 0.0 | PREDICTED: transcription factor PIF3 | ||||
TrEMBL | A0A0S3RZZ5 | 0.0 | A0A0S3RZZ5_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA19G41261.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5271 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 2e-43 | phytochrome interacting factor 3 |