PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g05940.1 | ||||||||
Common Name | LR48_Vigan03g250500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 358aa MW: 39579.3 Da PI: 4.6649 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 29.3 | 1.1e-09 | 11 | 55 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 ien r+ + k r+ +lKK e L +LCd++++ ii+++ + + Vang04g05940.1 11 LIENFVARKARYRKIRENLLKKVEDLTTLCDVNACAIIYGPGDDV 55 69999***********************************97766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.811 | 2 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.4E-11 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-5 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.23E-19 | 4 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-17 | 4 | 88 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-10 | 12 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-5 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-5 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MARRKKVTLK LIENFVARKA RYRKIRENLL KKVEDLTTLC DVNACAIIYG PGDDVPTVWP 60 SHDIAKELLD KFENAPLPER LKKNVTPQLY IDQMNRKIEK QVMKLKKKND EKDMSNFLHN 120 IHDGKSLSDL DASDICRLLC YVEGKLKCAG VKVHISEQQL STKTPTPLVS FPLQNDIDSC 180 ANIDEQVFQQ QSFLDSTKET GPMNSDSDNN KNTGLPPLQQ HAHDNTGLSQ VNFESLNLDD 240 IGMVLHSANF NDVIDDNGLA FGMLAQDNYI GICDNGDLGL LHGSSSGGEI TGNDIWSSYE 300 SFGDISESDT MLPFNNNVQD NIDGTFMGAN VENEGVSINN IELSGDQRTT SGGHLNS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g05940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017417885.1 | 0.0 | PREDICTED: MADS-box transcription factor PHERES 1-like isoform X1 | ||||
TrEMBL | A0A0L9U8M2 | 0.0 | A0A0L9U8M2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007162987.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15602 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65300.1 | 2e-23 | AGAMOUS-like 38 |
Publications ? help Back to Top | |||
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