PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g05450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WRKY | ||||||||
Protein Properties | Length: 532aa MW: 58279.2 Da PI: 7.7705 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.6 | 3.4e-30 | 191 | 250 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+++d +++++tYeg+Hnh+ Vang04g05450.1 191 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApTCPVRKQVQRCSQDLSILITTYEGTHNHP 250 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-31 | 177 | 252 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-27 | 184 | 252 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.449 | 186 | 252 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.6E-36 | 191 | 251 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-26 | 192 | 250 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
LKQKMSSPSN PEIEEKRVTQ EDKVKSAKTE MGEVKEENER LKKTLERVEK DYQSLQLRFF 60 DILHKDVPKK GVVTSHDDQS EEPEFVSLCL GRSPTEPKKE ARIADFDKPT EENVGPNLTL 120 GLDSKHLLEM EIVSDLSPMN SSEEPKETER EGTLSTSQSA KVINVNTDIS DQMPAKRARV 180 SVRARCDTPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA PTCPVRKQVQ RCSQDLSILI 240 TTYEGTHNHP LPVSATAMAS TTSAAASMLL SGSSTSSSHI SASFGNGLSF SEQFSESRAK 300 QIFSPSNHAS PHVFSTITLD LTSSAPSSSS TQFHRGLTST MAPVSNPRSS ASLSFCSPEH 360 NFIPSIWGKG FHDNATTTTA IDKVPTRPIT QPNNFQQHFY QQCTTNQTPS REALAETITK 420 AISTDPSFRS VIAAAVSSIV ERGSNVDKQE VTEYGLGSGL NLKLGEHLQL ASPSPLNQNG 480 KGCLTGYFKS LASKTSEAGN FILLQPPLPF SFSKNVTNQI NRYVPEMNTH H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-20 | 178 | 252 | 1 | 74 | WRKY transcription factor 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g05450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017416292.1 | 0.0 | PREDICTED: probable WRKY transcription factor 72 | ||||
TrEMBL | A0A0S3RS63 | 0.0 | A0A0S3RS63_PHAAN; Uncharacterized protein | ||||
STRING | XP_007139595.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 2e-79 | WRKY DNA-binding protein 72 |