PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g12780.1
Common NameLR48_Vigan09g132300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 389aa    MW: 42771.4 Da    PI: 7.1402
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g12780.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.92.1e-33122179260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  Vang03g12780.1 122 DDGYNWRKYGQKQVKGSENPRSYYKCTYPSCPTKKKVERSL-DGQITEIVYKGSHNHPK 179
                     8****************************************.***************85 PP
2WRKY53.74.3e-172482842359
                     EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  23 sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     sYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  Vang03g12780.1 248 SYYKCTFTGCPVRKHVERASHDLRAVITTYEGKHNHD 284
                     9***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-28118180IPR003657WRKY domain
SuperFamilySSF1182901.44E-25119180IPR003657WRKY domain
SMARTSM007746.0E-36121179IPR003657WRKY domain
PfamPF031061.4E-25122178IPR003657WRKY domain
PROSITE profilePS5081126.395122286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.1E-17217286IPR003657WRKY domain
SMARTSM007741.8E-10223285IPR003657WRKY domain
PfamPF031066.0E-12247284IPR003657WRKY domain
SuperFamilySSF1182909.42E-14247286IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
LPSPTTGSYA GQGFNWKSYG ESQQHVKEED KSFSSFSFQT QPQTQIPLTS STGFQSSNGW  60
SFPETAKQDG FSSRMNMSMV KTEASSGMQS FNSENNNHSS AGLQSDYSSY QPQVQILSRR  120
SDDGYNWRKY GQKQVKGSEN PRSYYKCTYP SCPTKKKVER SLDGQITEIV YKGSHNHPKP  180
QANKRNSLSA SSLAINSVNN EIAQATHHMD SVATPENSSI SMEDDDFGQS KSGGDEFDND  240
EPDAKRWSYY KCTFTGCPVR KHVERASHDL RAVITTYEGK HNHDVPAARG SGSNSISRAV  300
PINATTNSTT SAATSIYSNN SHQNLRPPAL ERTQHYNPSM QQGSGSFGFS GFGNPLMGSY  360
MNQQSDNVFA SRAKEEPGDD SFLDSLLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-16113286674WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g12780.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434665.10.0PREDICTED: probable WRKY transcription factor 26
SwissprotQ6B6R41e-82WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A0L9VDB50.0A0A0L9VDB5_PHAAN; Uncharacterized protein
STRINGXP_007146842.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.21e-53WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]