PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang02g14130.1

Common Name

LR48_Vigan10g280500

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 95aa MW: 10900.6 Da PI: 10.7666

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g14130.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.4	2.9e-12	2	34	11	45
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +l+++++++G + W++Ia+++ gRt++++k+rw+ Vang02g14130.1 2 ILIKGHQEFGRK-WSKIAKRLS-GRTENDIKNRWN 34 69******99.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.775	1	41	IPR017930	Myb domain
SMART	SM00717	2.8E-4	1	39	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-10	2	34	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.7E-15	2	38	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.21E-11	2	42	IPR009057	Homeodomain-like
CDD	cd00167	6.67E-8	2	34	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MILIKGHQEF GRKWSKIAKR LSGRTENDIK NRWNATIRRQ NCNKNSKAHY KGSILHAYVK 60 WVTATEDKVL RKPSDKKNQN VFGCTCDELA LLLS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269\|PubMed:16214903, ECO:0000269\|PubMed:17693534, ECO:0000269\|PubMed:17937500, ECO:0000269\|PubMed:18410484, ECO:0000269\|PubMed:23093426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g14130.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	1e-158	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017439327.1	9e-63	PREDICTED: myb-like protein Q
Swissprot	Q9S7L2	2e-13	MYB98_ARATH; Transcription factor MYB98
TrEMBL	A0A0L9VPM6	1e-61	A0A0L9VPM6_PHAAN; Uncharacterized protein
STRING	XP_007151013.1	3e-36	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14336	10	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	9e-16	myb domain protein 98

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024] Mendes MA, et al. Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis. Development, 2016. 143(15): p. 2780-90 [PMID:27338615]