PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g12310.1 | ||||||||
Common Name | LR48_Vigan10g210300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 257aa MW: 29449.3 Da PI: 7.3394 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.5 | 1.6e-13 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + + G ++W+++++ g+ R++k+c++rw +yl Vang02g12310.1 24 RGPWTIEEDHKLMNFILNNGIHCWRAVPKLAGLLRCGKSCRLRWINYL 71 89******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-20 | 15 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.392 | 19 | 75 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-6 | 23 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.28E-17 | 24 | 93 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.5E-12 | 24 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.19E-4 | 26 | 71 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-4 | 79 | 96 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
LFFCKRVGSK MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRAV PKLAGLLRCG 60 KSCRLRWINY LRPDLKRGRT DNEIKNHWNT KIKKRLKVLG LDPLTLMPIE QKQQQSGDDD 120 KLKTEKQQKS TSKGSDQGVD SKPLDMHATG EEPKTEDKME EKKVTWDDTT GFLNNYEMLC 180 SQLELGSWLS QETKASTSSY CSSSFSLDDS SNLSVCESSY LQENSLQQWV EDLDSSLSWD 240 SFNPLHTDFP FLENRQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g12310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017439483.1 | 1e-162 | PREDICTED: myb-related protein 315 | ||||
TrEMBL | A0A0L9VMB6 | 1e-160 | A0A0L9VMB6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T8K8 | 1e-160 | A0A0S3T8K8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007151568.1 | 1e-131 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6625 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 4e-58 | myb domain protein 40 |
Publications ? help Back to Top | |||
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