PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0291s00220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 382aa MW: 42767.2 Da PI: 8.9487 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.9 | 2.7e-16 | 213 | 259 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRd+iN+++ eL++l+P++ K +Ka++L ++++Y+k+Lq Vang0291s00220.1 213 VHNQSERRRRDKINQRMKELQKLVPNS-----SKTDKASMLDEVIQYMKQLQ 259 6*************************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 18.12 | 209 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-18 | 211 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-14 | 213 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-18 | 213 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.10E-16 | 214 | 263 | No hit | No description |
SMART | SM00353 | 6.6E-18 | 215 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MSQRVPSCDV DDNTISTPTK FPLISTSNFI AHEVPMLGYK LACKKGQPST HQHTPANQTT 60 WEIPRTSGTL ESIVNHGIAK NCHQLLTKDA LVPSFPKQGT VFGACKKGYP GRVESGVVAR 120 GPPTYELTGI KDSSMSGCDT CPRELSVTFN SATMGLPENT TSSVKQCTET TANDYRDSVS 180 HRRSQSEARE EDCKTTGVDR SCESNKRIKA SAVHNQSERR RRDKINQRMK ELQKLVPNSS 240 KTDKASMLDE VIQYMKQLQA HLQMMNWMKM YSSMMLPITM QQQQLKMSML MAQMGMGMRM 300 SKDMAMNMNM NMDMNMNMNM NNMNIPTIAP MLHLPPFMPM ASCADRLLAD LEKSETVDAY 360 SKMAALYNQM YHHPPDSSSK K* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 217 | 222 | ERRRRD |
2 | 218 | 223 | RRRRDK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0291s00220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017441702.1 | 0.0 | PREDICTED: transcription factor UNE10-like | ||||
TrEMBL | A0A0S3SXT2 | 0.0 | A0A0S3SXT2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007134726.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5676 | 33 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 8e-38 | bHLH family protein |