PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0268s00020.1
Common NameLR48_Vigan03g265800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 321aa    MW: 36609.9 Da    PI: 6.4235
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0268s00020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.9e-092612952155
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       + +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  Vang0268s00020.1 261 RWPYPTEEEKVKLSEVTGLDQKQINNWFINQRKRH 295
                       468*****************************885 PP
2ELK30.96.1e-11216236222
               ELK   2 LKhqLlrKYsgyLgsLkqEFs 22 
                       LK++LlrKYsg+ ++L++EF+
  Vang0268s00020.1 216 LKEMLLRKYSGHFSTLRKEFL 236
                       9*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.2E-1958102IPR005540KNOX1
PfamPF037909.8E-2060101IPR005540KNOX1
SMARTSM012565.7E-24105156IPR005541KNOX2
PfamPF037911.3E-22110155IPR005541KNOX2
SMARTSM011888.3E-6215236IPR005539ELK domain
PROSITE profilePS512139.952215235IPR005539ELK domain
PfamPF037892.9E-9216236IPR005539ELK domain
PROSITE profilePS5007112.633235298IPR001356Homeobox domain
SMARTSM003892.0E-13237302IPR001356Homeobox domain
SuperFamilySSF466895.13E-19237309IPR009057Homeodomain-like
CDDcd000864.14E-14238298No hitNo description
Gene3DG3DSA:1.10.10.602.0E-25240300IPR009057Homeodomain-like
PfamPF059204.8E-16255294IPR008422Homeobox KN domain
PROSITE patternPS000270273296IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEAVYRLKPL LPCVEDVLRV GNAAVTTTSD MRLGTTANCY LQLEAPEPNV TELDMTDRMV  60
KIQIADHPLY PDLLSAYIEC RKVGAPPELA CLLEEIGRES HRMNVRREKG DGSELDQFME  120
TYCEVLHRYK EELSRPFNEA TLFLGNMESQ LSNLCNGTLI KSPDNNRSGK YSIHFHAYSF  180
VLCCGGASEE ELSCGEMEEV EGRISSSLSC PGDQNLKEML LRKYSGHFST LRKEFLKRRK  240
KGKLPKDSKM ALMDWWNTHH RWPYPTEEEK VKLSEVTGLD QKQINNWFIN QRKRHWKPTE  300
DMRFAVMDGL SGVGGGAMFI *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0268s00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-136AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416278.10.0PREDICTED: homeobox protein knotted-1-like 10 isoform X3
SwissprotQ9FP295e-84KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A0L9U9820.0A0A0L9U982_PHAAN; Uncharacterized protein
STRINGGLYMA03G39041.21e-177(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.17e-79KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]