PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0229s00150.1 | ||||||||
Common Name | LR48_Vigan11g130600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 272aa MW: 29313 Da PI: 6.6711 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.5e-16 | 12 | 50 | 7 | 47 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ Vang0229s00150.1 12 EEDRIIVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 50 9***************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.925 | 1 | 55 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-10 | 5 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.75E-12 | 10 | 51 | No hit | No description |
Pfam | PF00249 | 4.2E-13 | 11 | 50 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-18 | 11 | 52 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.09E-12 | 11 | 53 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MLVSLLGLTN NEEDRIIVAA HAIHGNKWAA IARLLPGRTD NAIKNHWNST LRRRGVELDK 60 IKLESGNFME DASLEKAKAS SEDTLSCGDV SLKSSEGRDV SSVDIMDDKS DGKAQAEGQL 120 HHKVKDPPTL FRPVARVSAF NVYHSNDVIQ PSTSIQRPVP KQGPILQSSR PDMEFCRMVE 180 GICGDQAVPH QCGHGCCASP NGRKSESSLL GPEFIEFSEP PSFPNFELAA IAADISNLAW 240 LKSGLENSSV KMMGNTSGSA MSNGSRIHIG H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mbj_A | 3e-17 | 12 | 54 | 9 | 51 | MYB PROTO-ONCOGENE PROTEIN |
1mbk_A | 3e-17 | 12 | 54 | 9 | 51 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0229s00150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017442243.1 | 0.0 | PREDICTED: transcriptional activator Myb isoform X2 | ||||
TrEMBL | A0A0L9VTT2 | 0.0 | A0A0L9VTT2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007134781.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3986 | 33 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09230.1 | 3e-71 | myb domain protein 1 |
Publications ? help Back to Top | |||
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