PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g19410.1 | ||||||||
Common Name | LR48_Vigan01g330800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||
Protein Properties | Length: 204aa MW: 22598.3 Da PI: 11.4108 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.8 | 7.8e-16 | 43 | 88 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W++eEd l +v+ +G+++W++I+ ++ gR++k+c++rw + Vang01g19410.1 43 RGTWSAEEDRVLTGLVEAHGPKNWALISLHVK-GRSGKSCRLRWCNQ 88 89*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 49.9 | 7.1e-16 | 97 | 137 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++Tt Ed ++++a+ +lG++ W++Iar ++ gRt++ +k++w+ Vang01g19410.1 97 PFTTREDAIILHAHDRLGNK-WAAIARLLP-GRTDNAVKNHWN 137 89******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.967 | 38 | 93 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-13 | 42 | 91 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.01E-29 | 42 | 136 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-15 | 43 | 88 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-22 | 44 | 96 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.76E-12 | 45 | 87 | No hit | No description |
SMART | SM00717 | 5.5E-13 | 94 | 142 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.576 | 95 | 144 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.1E-13 | 97 | 137 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-21 | 97 | 143 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.98E-9 | 97 | 140 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
LTQKSNPKSK MRRTKRCSSS SSSHSSESNP SNNHNSNNGV RVRGTWSAEE DRVLTGLVEA 60 HGPKNWALIS LHVKGRSGKS CRLRWCNQLS PTVEHRPFTT REDAIILHAH DRLGNKWAAI 120 ARLLPGRTDN AVKNHWNATL KRRASQRRRF GDDPLTALTL APPGSGGGGW TGGFRDVVAR 180 EVREYVSFSF SDKLGSNEKL SKY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-39 | 42 | 144 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-38 | 42 | 144 | 57 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-38 | 42 | 144 | 57 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-39 | 42 | 144 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-39 | 42 | 144 | 3 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g19410.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017433979.1 | 1e-140 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | O23160 | 1e-47 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A0L9TTL0 | 1e-139 | A0A0L9TTL0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RQ43 | 1e-139 | A0A0S3RQ43_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA17G36370.2 | 4e-83 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5074 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 2e-50 | myb domain protein 70 |
Publications ? help Back to Top | |||
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