PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g10450.1
Common NameLR48_Vigan07g198300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 319aa    MW: 35702.1 Da    PI: 6.7901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g10450.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-13119170155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Vang01g10450.1 119 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 170
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.65E-14117174No hitNo description
SuperFamilySSF474592.09E-16118181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-13118173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-10124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MALEAVVFPQ DPFTYPCNKD YFYSLLHNNL QEAENKAFLG IITNNIDHTL HANWDSSSPS  60
ALQNIKDQWD SHSSPEPCTV DQSLPAAFPP PPPPSEPXPG RRKRRRTKST KNKEEIENQR  120
MTHIAVERNR RKQMNEYLAV LRSLMPPSYV QRGDQASIIG GAINFVKELE QLLQCMKGQQ  180
RTKENGGGFS DSSSPFDEFF MFPQYSTRAT QNGRGYPSTC EARSHSWAVA DIEVTLVDGH  240
ANIKILSKKQ PGLLLKMVVG LQTLAFTILH LNVTTVDDMV LTSVSVKVEE GCQMNTVEEI  300
AGAVHELSRR IQEEGVLR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101105RKRRR
2101106RKRRRT
3119130RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g10450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429107.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T48e-90BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0L9V0J30.0A0A0L9V0J3_PHAAN; Uncharacterized protein
STRINGXP_007141222.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]