PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0057ss02130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ARR-B | ||||||||
Protein Properties | Length: 664aa MW: 74826.3 Da PI: 6.1336 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76.8 | 2.8e-24 | 213 | 266 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl Vang0057ss02130.1 213 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 266 68*******************.9*******************************8 PP | |||||||
2 | Response_reg | 66.9 | 9.2e-23 | 24 | 141 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHT......TTSEEE.EEESTTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reee......pklpii.vvtahge 82 vl+vdD+p+ +++l+++l+k +y ev+++ ++ al+ll+e++ +D+++ D++mp+mdG++ll++ e + ++l++ v++ ge Vang0057ss02130.1 24 VLVVDDDPTWLKILEKMLKKCNY-EVTTCCLARHALNLLRERKdgYDIVISDVNMPDMDGFKLLEHVgLEMDlpvishHTLQCCsVMSVDGE 114 89*********************.***************999999**********************777667676655555443788**** PP HHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 83 eedalealkaGakdflsKpfdpeelvk 109 + + + ++ Ga d+l Kp+ ++el++ Vang0057ss02130.1 115 TSRVMKGVQHGACDYLLKPIRMKELRN 141 ************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 2.56E-30 | 21 | 161 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.7E-40 | 21 | 165 | No hit | No description |
SMART | SM00448 | 4.9E-26 | 22 | 143 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 35.609 | 23 | 147 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.4E-19 | 24 | 142 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.27E-26 | 25 | 147 | No hit | No description |
SuperFamily | SSF46689 | 1.61E-16 | 211 | 268 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-27 | 211 | 270 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-21 | 213 | 266 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-7 | 215 | 265 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
LSLSKMDNGC FSSPRRDFPA GLRVLVVDDD PTWLKILEKM LKKCNYEVTT CCLARHALNL 60 LRERKDGYDI VISDVNMPDM DGFKLLEHVG LEMDLPVISH HTLQCCSVMS VDGETSRVMK 120 GVQHGACDYL LKPIRMKELR NIWQHVFRKR IHEAKEFESF ESFESIHLMR NGSELSDEGN 180 LFAVEDVTST KKRKDADNKH DDKECMDPSS AKKARVVWSV DLHQKFVKAV NQIGFDKVGP 240 KKILDLMNVP WLTRENVASH LQKYRLYLIR IQKENDRRSS SSGMKHSDFP SKDLGSFGFQ 300 NPVNKQQNDV STDSYNYSDG SLHLPTVENK NYEGDKGSVS QFTIAKKGRP LTGNVTDSNM 360 RESSRVGLNQ PFAQSEGNHA VFDCSLPTQY SWTEVPNMQL KEEHKSLVHL EDSFNQMPLH 420 GKQHHIQVDQ SQSVASISSA PSITEEEVPA CIEAKPLFSD FKNDRSSSVN SIGNAVDTFP 480 IQPGSLAMNA QSLEPISTTN SGLKAHGYNN LSCISDVEIY QRNLLLGGEA ASAPLDEDLH 540 FQWLQGECYN MNFGLQNIGM SEYYDPGLIA EAPSHLYDSA DYSVIDQGLA ENSEPRASIT 600 GTTLKRLVYK NGFRTKQCWT KKLKVNFEQY KGGFDEFPKL LSWTVLELEL AFLTSFGDRD 660 SVGE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-17 | 209 | 271 | 1 | 63 | ARR10-B |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0057ss02130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017418950.1 | 0.0 | PREDICTED: two-component response regulator ARR11-like isoform X1 | ||||
Refseq | XP_017418951.1 | 0.0 | PREDICTED: two-component response regulator ARR11-like isoform X1 | ||||
TrEMBL | A0A0L9UAK3 | 0.0 | A0A0L9UAK3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S171 | 0.0 | A0A0S3S171_PHAAN; Uncharacterized protein | ||||
STRING | XP_007163714.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3999 | 33 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-120 | response regulator 11 |