PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0057ss01680.1
Common NameLR48_Vigan102s010500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 448aa    MW: 49471.9 Da    PI: 7.8149
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0057ss01680.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.24e-42169245278
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        CqvegC  dls+ak+yhr+h+vCe hsk+p+vlv+gle+rfCqqCsrfh+lsefD++krsCr+rL++hn+rrrk+q+
  Vang0057ss01680.1 169 CQVEGCGLDLSSAKDYHRKHRVCEGHSKSPKVLVAGLERRFCQQCSRFHALSEFDDKKRSCRKRLSDHNARRRKPQP 245
                        **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.9E-34161230IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.47166243IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-39167248IPR004333Transcription factor, SBP-box
PfamPF031103.5E-32169242IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEWNAKSLGQ WDWEHLFFFN TKATENPRLP TTDCSNEADR EINVGVFYPS GGSACSGSEL  60
VHASSPRSSK SASNNSLSNE DSKASVLTLE GSQDDSTGKK ELCPVETSQS AVPSPVSGEP  120
LLTLKLGKRL YFEDVCAGSD SKKASSFEVP ISSGKKYKTS NQNLQHPSCQ VEGCGLDLSS  180
AKDYHRKHRV CEGHSKSPKV LVAGLERRFC QQCSRFHALS EFDDKKRSCR KRLSDHNARR  240
RKPQPDSVQL NPSALSSSPY DGRQMMSPFA FSRSATNMGW QNLHSNKLPQ TKDFLPKPAK  300
AFDKIPSIVS MFSDDNSGLL TSRSIAAKTI VPGLEDPNSI SSCDPNGAQD VNRALSLLSS  360
NSWGPYETKF LSLERSSRTQ SMTHQQQRLP LASSSEYWHT DHQQQQPSPS TMSMCISFSD  420
CDTNNRFQDF QLLSAPYDSP FPCNHLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-261692421184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224241KKRSCRKRLSDHNARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0057ss01680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017405570.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_017405571.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_017405572.10.0PREDICTED: squamosa promoter-binding-like protein 12
TrEMBLA0A0L9T4F10.0A0A0L9T4F1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S1D30.0A0A0S3S1D3_PHAAN; Uncharacterized protein
STRINGXP_007163771.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.37e-59squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]