PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0045ss00820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YA | ||||||||
Protein Properties | Length: 230aa MW: 25839.7 Da PI: 8.8417 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.1 | 5.1e-32 | 134 | 190 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k +++rkpylheSRh hAlrRpRg+gGrF Vang0045ss00820.1 134 EEPVFVNAKQYHGILRRRQSRAKAESENKA-IRNRKPYLHESRHMHALRRPRGCGGRF 190 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 8.2E-36 | 132 | 193 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.942 | 133 | 193 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 6.6E-27 | 135 | 190 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.9E-24 | 136 | 158 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 138 | 158 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 4.9E-24 | 167 | 190 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
LSVFVLPLWY IQYVWIVLRP TRNMTSAHNL TDNEDEGQHQ SESQVQSPST NGISDSAIRT 60 QNVNVQYATP GQLGAGHAMV PPVYPYPDPY YRSIFAPYDT QPYPPQAYGG QPMVHLQLMG 120 IQQAGVPLPT DAVEEPVFVN AKQYHGILRR RQSRAKAESE NKAIRNRKPY LHESRHMHAL 180 RRPRGCGGRF LNSKKEENEH NDVASADKSQ SNINLNSDKN DQTSSDRTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 9e-21 | 133 | 200 | 1 | 68 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0045ss00820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT089415 | 0.0 | BT089415.1 Soybean clone JCVI-FLGm-1L22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017410213.1 | 1e-153 | PREDICTED: nuclear transcription factor Y subunit A-7-like | ||||
Swissprot | Q84JP1 | 2e-70 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A0S3QYY6 | 1e-151 | A0A0S3QYY6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007159545.1 | 1e-135 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5379 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 1e-59 | nuclear factor Y, subunit A7 |
Publications ? help Back to Top | |||
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