PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0033ss01130.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 481aa    MW: 52742.2 Da    PI: 8.0778
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0033ss01130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.7e-30139198159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpvkk+v+r+aed ++++ tYeg+Hnh+
  Vang0033ss01130.1 139 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVKKQVQRCAEDMSILISTYEGTHNHP 198
                        58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-30124200IPR003657WRKY domain
SuperFamilySSF1182901.15E-26133200IPR003657WRKY domain
PROSITE profilePS5081127.864134200IPR003657WRKY domain
SMARTSM007742.0E-35139199IPR003657WRKY domain
PfamPF031063.7E-26140198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MQDHKLEREM REVGELSLVR LVNDSTSDEE SELVSLSLGI SSTGKHEKKI RTENSRENED  60
LKEGLSLGLG IRFDPSAIQN QSTESRCDGE MKEEELREIW PPSKVLKTMR TWDKSEASQH  120
AEVKKARVCI RARCDNLTMN DGCQWRKYGQ KIAKGNPCPR AYYRCTVSPS CPVKKQVQRC  180
AEDMSILIST YEGTHNHPLP TSATTMAYTT SAAASMLQSP SLTTQLGLLN SDTVPLLNSN  240
VLYNLNALNF TSSCHHVSKS PHLFFHSSSI STSSSHPTVT LDLATLQTSP HIGNFTPSLS  300
FIPKYSSTNV DFPSSTFSPL QSSVLHSPCY GDYFNYEGLI TPNRNLNGSH MNTGKQPFLG  360
HLCRSNNITN HAVSKQSLPD SIVAASKAIT ATPKYQSAIL AAALTAYAGN GLRENHDEAQ  420
SAGLDLNLGG DMPYTTKTIY PNSNASRYKR MSFSAPTAPK INSVIFQPSH ASKSNLLLDQ  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-201392001474WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0033ss01130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416281.10.0PREDICTED: probable WRKY transcription factor 72
TrEMBLA0A0S3R1X40.0A0A0S3R1X4_PHAAN; Uncharacterized protein
STRINGXP_007153834.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.18e-50WRKY DNA-binding protein 72