PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0032ss01920.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 442aa MW: 49579.2 Da PI: 8.0893

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0032ss01920.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.7	1.7e-10	157	197	4	44
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k rr+++NReAA++sR+RKka++++Le +L+ ++ Vang0032ss01920.1 157 AKTLRRLAQNREAAKKSRLRKKAYVQQLESSRLKLTHLEQD 197 6889*************************877776666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.4E-7	154	231	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.4E-8	156	200	No hit	No description
PROSITE profile	PS50217	8.967	156	200	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.2E-8	157	199	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.34E-6	158	201	No hit	No description
CDD	cd14708	2.21E-22	158	209	No hit	No description
PROSITE pattern	PS00036	0	161	176	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.6E-30	239	314	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MRGFQFQLQR RNQGSGFDFG ELEEAFAPLQ GIKIRSDEAK SCMFHCFCSS PFDEHSSFIH 60 RQAFSHTGNV PFMANEIPPN PKSTTLSHIP IFDQFISKDA HNKNRFNNKD AFCYPYHVHD 120 CTPPQEKLPN KGPFHSEMPP KNSRKGAGST SEKPLDAKTL RRLAQNREAA KKSRLRKKAY 180 VQQLESSRLK LTHLEQDLQR ARSQGVFMGC GGAGGSILSS GAAMFDLEYA RWLEDDHRHM 240 AELRTGLQAP LSDGELRVIV DGYLSHYDEV FRLKGVAAKT DVFHLINGMW TSPAERCFLW 300 IGGFKPSELI TMLIQQLEPL AEQQIMGICA LRHSSVQAED ALTQGLEQLQ QSLVDTIAGG 360 SVADGADNLR QQTLHQLCRL LTVRQAARCF VVIGEYYGRL RALSSLWASR PRESMISDDN 420 SCQTTTALQM VQPSQNHFSN F*

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MRGFQFQLQR RNQGSGFDFG ELEEAFAPLQ GIKIRSDEAK SCMFHCFCSS PFDEHSSFIH  60
RQAFSHTGNV PFMANEIPPN PKSTTLSHIP IFDQFISKDA HNKNRFNNKD AFCYPYHVHD  120
CTPPQEKLPN KGPFHSEMPP KNSRKGAGST SEKPLDAKTL RRLAQNREAA KKSRLRKKAY  180
VQQLESSRLK LTHLEQDLQR ARSQGVFMGC GGAGGSILSS GAAMFDLEYA RWLEDDHRHM  240
AELRTGLQAP LSDGELRVIV DGYLSHYDEV FRLKGVAAKT DVFHLINGMW TSPAERCFLW  300
IGGFKPSELI TMLIQQLEPL AEQQIMGICA LRHSSVQAED ALTQGLEQLQ QSLVDTIAGG  360
SVADGADNLR QQTLHQLCRL LTVRQAARCF VVIGEYYGRL RALSSLWASR PRESMISDDN  420
SCQTTTALQM VQPSQNHFSN F*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0032ss01920.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	1e-150	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017432249.1	0.0	PREDICTED: transcription factor TGA2 isoform X2
Swissprot	Q93XM6	1e-164	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A0L9V674	0.0	A0A0L9V674_PHAAN; Uncharacterized protein
STRING	XP_007150072.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-159	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]