PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0032ss01150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 172aa MW: 18790.3 Da PI: 7.6036 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.8e-05 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Vang0032ss01150.1 59 HECSICGSEFSSGQALGGHMRRH 81 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.83E-6 | 56 | 84 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.9E-4 | 57 | 81 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.159 | 59 | 86 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.1E-12 | 59 | 83 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MEGASHKKPK LSPEEKKPPP SQSPHVAVTT YDRFEEDNVK NGPPISLQLG HGNNKGKIHE 60 CSICGSEFSS GQALGGHMRR HRSSTNTNTV DTSGSNTVIA VATTVSPPRN VLQLDLNLPA 120 PEDDIREAKF QFPVTTQMLV DPLPWFGVWL AFAKAKLLEV RMTVEQILTY C* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0032ss01150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432526.1 | 5e-97 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | A0A0L9V6T0 | 1e-95 | A0A0L9V6T0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SCI4 | 1e-95 | A0A0S3SCI4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007132339.1 | 6e-74 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 5e-26 | C2H2 family protein |