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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Vang0021ss01170.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family |
GRAS |
Protein Properties |
Length: 654aa MW: 74217.5 Da PI: 6.0315 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Vang0021ss01170.1 | genome | SNU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 356.8 | 3.1e-109 | 279 | 650 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
l+ lL+ cA+av+s++ + a++lL+++++++sp gd +qRla+yf +AL a l +++ ++y+ l++++ s ++ ++a++++ v+P+ k
Vang0021ss01170.1 279 LRALLMLCAQAVASDSPSFAKQLLKQIKQHSSPIGDDTQRLAHYFGNALGACLDGTGFQVYSVLSSKRIS---AKDMVKAYCAYASVCPFEK 367
5789***********************************************************9999998...899999************* PP
GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
++ + aN+ I e++e+vHiiDf+i +G++Wp+L+ L++Rp+gpp+lRiTg+++p++g +e++ etg+rL++++++++vpfefn+ +
Vang0021ss01170.1 368 ITIIFANKSICFQSENAETVHIIDFGIRYGFKWPSLISILSKRPGGPPKLRITGIDQPQPGfrPEERVLETGRRLEHYCKRFNVPFEFNA-I 458
******************************************************************************************.7 PP
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
a++++++++e+L+++++E +aVn++++l++lldesv l+++rd+vL+l+k+ +P ++v++ + +h+ + F+ rf eal +ysalf++le++
Vang0021ss01170.1 459 ARKWDTIRFEDLKIEKNEFVAVNCMFELEHLLDESVVLDNPRDAVLRLIKKANPGIFVHSIVNGSHDVPFFVSRFREALFHYSALFNMLETN 550
******************************************************************************************** PP
GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdr 365
+ re+ +r + E+ l+grei+n+vaceg er+er +t+++W+ + ++ GF+ +pl++++ + k lr+ + + +++e + g++++gWk+r
Vang0021ss01170.1 551 IDREDPTRLMFEKDLFGREIMNIVACEGCERVERPQTYKQWQLQNMRIGFRLLPLDQRVIDRLKKRLRQDAhDTNFMLEVDGGWVLQGWKGR 642
***************************************************************999999887888***************** PP
GRAS 366 pLvsvSaW 373
L + S+W
Vang0021ss01170.1 643 ILHASSCW 650
******** PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 654 aa
Download sequence Send
to blast |
MDRRVSSTIN IANDEAESFF DESDVSAVLG YIKQMLMEED TEEKYSMFHD SLALQHTERS 60 FYQVITHQKS SSPSSTHHHH VQSNPSYRVE SPEQNVSGCS SDNSTGSYGS TSISSDSQWS 120 VDYNTPPLPN TFTFPDNFAF HSNSTSTTQS STNTGFGFLD NTLLDSAFQE QLSTAFSAVP 180 TVVIKTETEE SVEEEHFLSV SRRRNRDREE YEADGRIRKT SATYVDESEL SELLDKVVLG 240 TGLGKRVPSD TALYQKDETF LANMFGGKVR KSNEEVVDLR ALLMLCAQAV ASDSPSFAKQ 300 LLKQIKQHSS PIGDDTQRLA HYFGNALGAC LDGTGFQVYS VLSSKRISAK DMVKAYCAYA 360 SVCPFEKITI IFANKSICFQ SENAETVHII DFGIRYGFKW PSLISILSKR PGGPPKLRIT 420 GIDQPQPGFR PEERVLETGR RLEHYCKRFN VPFEFNAIAR KWDTIRFEDL KIEKNEFVAV 480 NCMFELEHLL DESVVLDNPR DAVLRLIKKA NPGIFVHSIV NGSHDVPFFV SRFREALFHY 540 SALFNMLETN IDREDPTRLM FEKDLFGREI MNIVACEGCE RVERPQTYKQ WQLQNMRIGF 600 RLLPLDQRVI DRLKKRLRQD AHDTNFMLEV DGGWVLQGWK GRILHASSCW VPA*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5b3g_A | 1e-49 | 268 | 652 | 8 | 380 | Protein SCARECROW |
5b3h_A | 9e-50 | 268 | 652 | 7 | 379 | Protein SCARECROW |
5b3h_D | 9e-50 | 268 | 652 | 7 | 379 | Protein SCARECROW |
5hyz_A | 7e-50 | 283 | 650 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 610 | 615 | DRLKKR |
2 | 611 | 617 | RLKKRLR |
3 | 612 | 618 | LKKRLRQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |