PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0013ss01160.1
Common NameLR48_Vigan08g123700
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 313aa    MW: 34739.4 Da    PI: 4.7818
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0013ss01160.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g WT+eEd +l+ +v+++G+ +W+  +r  g+ R++k+c++rw +yl
  Vang0013ss01160.1 14 KGTWTPEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNYL 61
                       799*******************************************97 PP
2Myb_DNA-binding57.23.9e-1867111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg++T++E++ +++ +k+lG++ W++Ia++++ gRt++++k++w++ 
  Vang0013ss01160.1  67 RGNFTPQEEDCIIRMHKKLGNR-WSAIAAELP-GRTDNEIKNHWHTT 111
                        89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-23664IPR009057Homeodomain-like
PROSITE profilePS5129417.108961IPR017930Myb domain
SuperFamilySSF466896.34E-3011108IPR009057Homeodomain-like
SMARTSM007179.6E-111363IPR001005SANT/Myb domain
PfamPF002495.6E-141461IPR001005SANT/Myb domain
CDDcd001679.10E-101661No hitNo description
PROSITE profilePS512942762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-2665115IPR009057Homeodomain-like
SMARTSM007172.0E-1766114IPR001005SANT/Myb domain
PfamPF002491.5E-1667111IPR001005SANT/Myb domain
CDDcd001671.70E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MVRTPSCDKS GLRKGTWTPE EDRKLIAYVT RYGSWNWRQL PRFAGLARCG KSCRLRWMNY  60
LRPNVKRGNF TPQEEDCIIR MHKKLGNRWS AIAAELPGRT DNEIKNHWHT TLKKRSEQNT  120
VTNEEARAFK SKNKESNPNG FTVTLPSNSG TSDNASASVS PLSSSSSVFS STASDDCSAA  180
SMKSLVFEDD DFGFLDSYME PMNESFWSEL NLDDISYSAA CEILSGDTSG AIQSTDTNVH  240
DCCAMSPHGS SSESIVVDNG SGSFLDAYAE ATVENFWMQP YVADMSHVPS ELLVPSVVES  300
EYFTPIYDDL WG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29121155107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0013ss01160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432789.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A0L9V5S10.0A0A0L9V5S1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SBG00.0A0A0S3SBG0_PHAAN; Uncharacterized protein
STRINGXP_007132612.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-60myb domain protein 14
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]