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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0013ss01140.1 | ||||||||
Common Name | LR48_Vigan08g124000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||
Protein Properties | Length: 311aa MW: 35119.2 Da PI: 5.454 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.9 | 7.3e-16 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +lv +v+++G +W+ ++ g+ R++k+c++rw +yl Vang0013ss01140.1 19 KGTWTPEEDMKLVAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYL 66 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 55 | 1.9e-17 | 72 | 116 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E+e +++ k lG++ W++Ia++++ gRt++++k++w++ Vang0013ss01140.1 72 RGNFTPQEEECIIRMLKTLGNR-WSAIAAELP-GRTDNEIKNHWHTT 116 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.521 | 14 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-29 | 16 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-9 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-23 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.74E-9 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 25.917 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 6.9E-17 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 72 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.20E-11 | 74 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-25 | 74 | 121 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
LFFTKMVRTP SCDKSGLRKG TWTPEEDMKL VAYVTRYGCW NWRQLPKFAG LARCGKSCRL 60 RWMNYLRPNL KRGNFTPQEE ECIIRMLKTL GNRWSAIAAE LPGRTDNEIK NHWHTTLKKK 120 YQQNTVTNED ARASKSKKKE SNKNGVTVRL TATSQISDNS SFSPVSSSSS EFSSITSDFS 180 SSTSMENLLF EDDLGFLDSY VNESFWKELN LDGEPCEVVS RDTTSTEMVD SCALSPHQSL 240 SESVVVDNDF GSFLDANGGV TFDNFWSQPY VADVSHVPSE LLVPSVVESE YFTPIYDDLW 300 GQSHFAQSKF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-27 | 17 | 120 | 5 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0013ss01140.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432683.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A0L9V5Y8 | 0.0 | A0A0L9V5Y8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SBU1 | 0.0 | A0A0S3SBU1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007132611.1 | 1e-169 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 3e-58 | myb domain protein 14 |
Publications ? help Back to Top | |||
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