PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0010ss02080.1 | ||||||||
Common Name | LR48_Vigan08g154200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ARF | ||||||||
Protein Properties | Length: 815aa MW: 90683.2 Da PI: 6.3659 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.8 | 4.8e-24 | 187 | 288 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + Vang0010ss02080.1 187 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--R 275 99****************************963.3445679************************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++el+++++r+ Vang0010ss02080.1 276 GENGELRLGIRRA 288 499999****996 PP | |||||||
2 | Auxin_resp | 110.7 | 1.5e-36 | 313 | 395 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks F+v+Y+Pr s+++Fvv++++++k++k++vs+G Rfkm++e+++s+err+ sGt++++sdldp+rWp+SkWr+L Vang0010ss02080.1 313 VANAVSTKSKFHVFYSPRESHADFVVPYQRYVKSIKNPVSIGARFKMRLEMDESQERRCnSGTMIATSDLDPYRWPKSKWRCL 395 689*******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-41 | 178 | 300 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-44 | 179 | 298 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.31E-23 | 185 | 287 | No hit | No description |
Pfam | PF02362 | 5.0E-22 | 187 | 288 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-24 | 187 | 289 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.084 | 187 | 289 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.6E-31 | 313 | 395 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 20.517 | 686 | 770 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 4.58E-10 | 689 | 765 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 815 aa Download sequence Send to blast |
LVVACFYFWL PFESLKSLHH QVFMEFDLNH EVTEVEKNAF GDREREKDAG VSCWSSSTSS 60 SSSSSSARVS SSYLELWHAC AGPLTSLPKK GNVVVYFPQG HLEQVASFSP FTPMEIPSYD 120 LQPQIFCRVV NVQLLANKEN DEVYTQVTLL PQPELEGMNS EGKELEEFGA EEEGDERSPT 180 KSTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYKQ QRPSQELVAK DLHGVEWKFR 240 HIYRGQPRRH LLTTGWSIFV SQKNLVSGDA VLFLRGENGE LRLGIRRAVR PRNDLPESVI 300 GSQNCYPNVL SSVANAVSTK SKFHVFYSPR ESHADFVVPY QRYVKSIKNP VSIGARFKMR 360 LEMDESQERR CNSGTMIATS DLDPYRWPKS KWRCLMVRWD EDIETNHQDR VSPWEIDPSA 420 PLPPLSIQSS PRLKKLRTGL QVASPSQLIT ARGSGLVGFE ESVRSPKVLQ GQENAGFVSL 480 YYGCDTVTKP LGFEMSSPSH PNLGSAEVRK ATSSEISSVH PFSYAGFVET NRFPRVLQGQ 540 EICPLKSLTG KIDLNLGTWG MPNLGFNLHQ ATKPNFQPTL FPYGDIHQAV QPSLFCSKST 600 TFQRENVPFN KPSTQAGIIV NEVGQPELPN EHKLQDNLSA AAALGAANMG VPNDNNVQGK 660 VNACKLFGFS LSGETTAQNL QNSAKRSCTK VHKQGSLVGR AIDLSRLSSY NDLLIELERL 720 FGMEGLLKDP NNGWRILYTD SENDIMVVGD DPWHEFCDVV SKIHIYTQEE VEKMTIGIIS 780 DDTHSCLEEA PIITEASKSS SVGQPDYSPT AVRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-119 | 57 | 418 | 2 | 354 | Auxin response factor 1 |
4ldw_A | 1e-119 | 57 | 418 | 2 | 354 | Auxin response factor 1 |
4ldw_B | 1e-119 | 57 | 418 | 2 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0010ss02080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017433556.1 | 0.0 | PREDICTED: auxin response factor 4 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A0L9V6M1 | 0.0 | A0A0L9V6M1_PHAAN; Auxin response factor | ||||
TrEMBL | A0A0S3SCL3 | 0.0 | A0A0S3SCL3_PHAAN; Auxin response factor | ||||
STRING | XP_007132189.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5236 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |