PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0004ss00720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||
Protein Properties | Length: 290aa MW: 32665.3 Da PI: 7.7622 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 33.9 | 8.5e-11 | 17 | 60 | 36 | 79 |
trihelix 36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 + r++g+ rs++qC++kw+nl ++ykk+++ e ++s sss+ Vang0004ss00720.1 17 SMARDHGCLRSQNQCNDKWDNLLRDYKKVRDYEATKSSSSSSHL 60 55699*****************************9977777654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 8.5E-7 | 18 | 59 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MSEPNLPPPD PTFYPSSMAR DHGCLRSQNQ CNDKWDNLLR DYKKVRDYEA TKSSSSSSHL 60 SNNNQFQFQS YWTMEKHQRK EHKLPSNMLL QVYQAVTQVL QKKSHTSQLH HHHQHHFVNV 120 VHSPPQEHPQ VTPLLTSTSQ PLSQTTPAAS QPLLLLPPPS LPPRPVDSTT PPVSEGSESS 180 GTECKNDDEN SESKRRKFEQ KLGSSIMRSA SELAQALRSC EEKKEKRHQE MMELHRRGLH 240 IEETRNQVNQ QGITNLVSAV TNLTGVIQSF ITMNKDHGAG NADDHACSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0004ss00720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426405.1 | 0.0 | PREDICTED: uncharacterized protein LOC108334997 | ||||
TrEMBL | A0A0L9UTF5 | 0.0 | A0A0L9UTF5_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T0P9 | 0.0 | A0A0S3T0P9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007153114.1 | 1e-116 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6804 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31310.1 | 5e-23 | Trihelix family protein |