PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7DL_04FC0BF21.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 272aa MW: 29497.9 Da PI: 4.7929 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 53.3 | 4.9e-17 | 50 | 99 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR +iN++f+ Lr+l+P++ ++K +Ka+ L +++eY+k Lq Traes_7DL_04FC0BF21.2 50 RSKHSATEQRRRCKINERFQILRDLVPQS----DQKRDKATFLLEVIEYVKFLQ 99 899*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.35E-16 | 46 | 103 | No hit | No description |
SuperFamily | SSF47459 | 3.01E-18 | 47 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-22 | 48 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.755 | 48 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-14 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-13 | 54 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MQNRVQSHPA GASSSASSGG DGSGSGFCLS DIMEIDAGSG GDHKAPGSPR SKHSATEQRR 60 RCKINERFQI LRDLVPQSDQ KRDKATFLLE VIEYVKFLQE KVQKHEACAG GDWSQENTKL 120 APWSSNRVPV DLMPGVAPTT KICSAGNFLD NSIPTMPEML QNAETVVEPA KLNADIVESQ 180 YQSQWQELSC PADCLVDSEM SNEKEELTID EGTITVSSVY SQNLFTALTN AMENLGIDLS 240 QASVTVNVNL GRRAISRSTN ISSAKKDMPA TN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178052.1 | 0.0 | transcription factor BIM2-like | ||||
Swissprot | Q9CAA4 | 2e-53 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A3B6TMD2 | 0.0 | A0A3B6TMD2_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453S9I2 | 0.0 | A0A453S9I2_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453S9Y4 | 0.0 | A0A453S9Y4_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7DL_04FC0BF21.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP762 | 37 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 1e-55 | BES1-interacting Myc-like protein 2 |
Publications ? help Back to Top | |||
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