PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_0176A3542.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 459aa    MW: 50058.1 Da    PI: 7.4855
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_0176A3542.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR444.4e-143271242
                    TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                           +kk+CnCk+s+Clk+YCeCfaag +C+  C+C++C Nk e+
  Traes_7DL_0176A3542.1 32 RKKQCNCKNSHCLKLYCECFAAGLYCDG-CNCKQCGNKVEN 71
                           689*************************.********9875 PP
2TCR50.54.2e-16114153140
                    TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                            k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  Traes_7DL_0176A3542.1 114 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCMDCKNFE 153
                            589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.8E-133171IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.4932154IPR005172CRC domain
PfamPF036381.1E-103368IPR005172CRC domain
SMARTSM011146.0E-19114155IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-12117152IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MLCFFSSSFF ALVGLVPEKP LVEIKSVTPP KRKKQCNCKN SHCLKLYCEC FAAGLYCDGC  60
NCKQCGNKVE NEHARQEAIN STKLRNPKAF QPKIENVPSA LSVRKDAGAP SVPKHNKGCH  120
CKKSGCLKKY CECFQANILC SKNCKCMDCK NFEGSEELQA IIQGDNASDK NNIQQAANVT  180
LNGAIGSSGY KYSPVRRKRH PEDPLGPEAN HLDASQVASS SGLEGCIGYQ SRSKMVYRSP  240
LANTIHPTDV NDLANHLVIV CRKATETFLT IADNKVEMEV ERGIYTNADL NNDKMKNREV  300
QNGGVSQPDV ATHIDQRTAG DLESPCNNTQ EDYRPASPGT QALLCDEQGT AFGSDYRTSF  360
PSAFHDQDTP ELSALQEKTV LTGFRDYLRL LITRGKINAN NSAGLTEANT SSEHAMELDA  420
RRNHGATTGP GVSSFPSEAV ERPKAPGDPE NPRTSDPSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-273316311132Protein lin-54 homolog
5fd3_B4e-273316311132Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150693.10.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A453S7I00.0A0A453S7I0_AEGTS; Uncharacterized protein
STRINGTraes_7DL_0176A3542.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.16e-87Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]