PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_7BS_63CE69B1D.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 352aa MW: 38215 Da PI: 7.0109

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_7BS_63CE69B1D.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	49.7	9.8e-16	9	42	45	78
TTSSEEETTT--SS--S-STTTT-------S--- CS SBP 45 qCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 q rfh lsefDe+krsCrrrLa+hn+rrrk+q+ Traes_7BS_63CE69B1D.1 9 QSFRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 42 677****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	14.34	1	40	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	3.4E-5	9	27	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.6E-9	10	39	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.49E-12	11	43	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
LLKVGSSGQS FRFHPLSEFD EGKRSCRRRL AGHNRRRRKT QPTDVASQLL LPENQENAAN 60 RTQDIVNLIT VIARLQGGNV GKLPSIPPIP DKDNLVQIIS KINSINNANS LAKSPPSEAI 120 DLNASQGQQQ DSSVQNATKV IDKQTVPSTM DLLTVLSGAL GTSTPETNTS QSQGSSDSSG 180 NNKSKSHSTE PACVVNSHEK SIXXXXXXXX RSSSTHGSPP EVYKQPDRDT HPYLSLQLFG 240 NNEDIPVKMD TANKYLSSES SNPMDERSPS SSPPVTHTFF PTRSVNEGIR HPRIADYGED 300 GATVENSTTR AWCAPPLELF KDSERPTENG SPPNPTYQSC YASTSGSDHS TS

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

LLKVGSSGQS FRFHPLSEFD EGKRSCRRRL AGHNRRRRKT QPTDVASQLL LPENQENAAN  60
RTQDIVNLIT VIARLQGGNV GKLPSIPPIP DKDNLVQIIS KINSINNANS LAKSPPSEAI  120
DLNASQGQQQ DSSVQNATKV IDKQTVPSTM DLLTVLSGAL GTSTPETNTS QSQGSSDSSG  180
NNKSKSHSTE PACVVNSHEK SIXXXXXXXX RSSSTHGSPP EVYKQPDRDT HPYLSLQLFG  240
NNEDIPVKMD TANKYLSSES SNPMDERSPS SSPPVTHTFF PTRSVNEGIR HPRIADYGED  300
GATVENSTTR AWCAPPLELF KDSERPTENG SPPNPTYQSC YASTSGSDHS TS

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF447879	0.0	KF447879.1 Triticum aestivum squamosa promoter-binding-like protein 15 (SPL15) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179484.1	0.0	squamosa promoter-binding-like protein 15
Swissprot	A2YX04	1e-166	SPL15_ORYSI; Squamosa promoter-binding-like protein 15
Swissprot	Q6Z8M8	1e-166	SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBL	A0A453RK48	0.0	A0A453RK48_AEGTS; Uncharacterized protein
STRING	Traes_7BS_63CE69B1D.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5456	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76580.1	4e-33	SBP family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]