PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7BL_056959446.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 249aa MW: 27774 Da PI: 8.3552 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.6 | 1.9e-12 | 1 | 80 | 16 | 96 |
EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 16 lvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +++p +f+++h ++ ++s++ + ++g+ W v+l +++++ ++ ++ W eF a++L eg +++F+++ +++f v+v Traes_7BL_056959446.1 1 MTIPDEFVQQHligAESCPSSQKALIIGPTGKLWPVEL--DQRQSDVLYGEVWVEFLTAHDLSEGNILLFRYEVNMSF--SVQV 80 78**********9966777999****************..999999**************************998999..5544 PP | |||||||
2 | B3 | 46.5 | 6.5e-15 | 157 | 240 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f ++ ++s++lks + + +f++++g+ +++ t++l+++ rsW v +++ ++ + + +kGWk+F+++n+++egD ++Fk++ Traes_7BL_056959446.1 157 F-TKQITSYSLKSF-FAVKLTFCSSIGLLEAC--TIQLKTSMEgsaRSWPVAFNIANTY-GLLTGKGWKRFCRDNEVEEGDRCTFKVV 239 4.445599***998.999**********9988..566666444468*******654444.58899*********************76 PP S CS B3 86 g 86 + Traes_7BL_056959446.1 240 E 240 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 4.82E-10 | 1 | 81 | No hit | No description |
SuperFamily | SSF101936 | 1.39E-12 | 1 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.379 | 1 | 84 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.1E-13 | 1 | 86 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.1E-8 | 1 | 79 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0038 | 1 | 84 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.2E-18 | 154 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.87E-16 | 154 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.05E-9 | 155 | 237 | No hit | No description |
PROSITE profile | PS50863 | 10.912 | 155 | 249 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.9E-7 | 157 | 249 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-11 | 158 | 240 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MTIPDEFVQQ HLIGAESCPS SQKALIIGPT GKLWPVELDQ RQSDVLYGEV WVEFLTAHDL 60 SEGNILLFRY EVNMSFSVQV LMPNGCMKEY PYLADEADGP STMLPQSDKQ LVAATVSKRS 120 YNKRQVVSAI PATFPAMKAK KVQSQSKPAG VVGRHSFTKQ ITSYSLKSFF AVKLTFCSSI 180 GLLEACTIQL KTSMEGSARS WPVAFNIANT YGLLTGKGWK RFCRDNEVEE GDRCTFKVVE 240 KMVWHVVIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194548.1 | 1e-158 | putative B3 domain-containing protein Os06g0632500 | ||||
TrEMBL | A0A3B6SJD5 | 0.0 | A0A3B6SJD5_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7BL_056959446.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31680.1 | 5e-12 | B3 family protein |
Publications ? help Back to Top | |||
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