PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AS_A6C843545.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 553aa    MW: 59874.4 Da    PI: 4.8222
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AS_A6C843545.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.32.4e-43221621128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkya..tgkrknratksgyWk 84 
                            lp+GfrF+Ptdeelv +yLk+k++g+ ++   +i++vd+  vePwdLp +  +k+++ ew+fF++rd+ +   +++r+ r+t++gyWk
  Traes_7AS_A6C843545.2  22 LPVGFRFRPTDEELVRHYLKAKIAGRAHPDLLAIPDVDLAAVEPWDLPaRsVIKSDDPEWFFFARRDRPKYpgKSSRSCRSTAAGYWK 109
                            79*************************999899***************5347777888********9855435678999********* PP

                    NAM  85 atgkdkevlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            atgkd+ + +          kg+l+g+kktLvf++grap+g +t W+mhey++
  Traes_7AS_A6C843545.2 110 ATGKDRLIRAPgprgcxcrgKGALIGVKKTLVFHRGRAPRGARTPWIMHEYTA 162
                            *********999999998888888***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-4814191IPR003441NAC domain
PROSITE profilePS5100550.97822191IPR003441NAC domain
PfamPF023653.2E-2523161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MTTAAGSESS SSSTPATAAA VLPVGFRFRP TDEELVRHYL KAKIAGRAHP DLLAIPDVDL  60
AAVEPWDLPA RSVIKSDDPE WFFFARRDRP KYPGKSSRSC RSTAAGYWKA TGKDRLIRAP  120
GPRGCXCRGK GALIGVKKTL VFHRGRAPRG ARTPWIMHEY TATDPNPQSQ SQSQSAGPQN  180
DSFVLYRLFN KQDEETPAPV SEPPSTSPPA NPPLQQADDT ASASMVEDKA SPSDSSQLTP  240
TNATTDHTST AHLLAAAGDA EQIADQDAAY LNMLAQLPAI SSPMRPYTDL PFVGNMGDEQ  300
EDFSMYLNNI IGEQDVQAML PNPADDETGV SNPTGSWTPY PQDMLDMINS IGPMGAAPWT  360
QQQQQATAPV ELMDPQQGIA ARRIRLAYAV ERASASQPIL ACHSESEEGE GESAGCSTES  420
SSNNHEEEDH VNDALFQTMA GDLMHNITPA QALLVSSVEV ADKLQHLSFN DDSILEEEDA  480
KPRRGAGLKQ RVKQDSGRNG HDPDGLLRNS AYLPGPGDSF SETARRRRSL WLALLVMAIP  540
LCLCLYWLVS GGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-35161949171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171646.10.0uncharacterized protein LOC109757228
TrEMBLA0A446WVN00.0A0A446WVN0_TRITD; Uncharacterized protein
STRINGTraes_7AS_A6C843545.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134132529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.33e-55NAC transcription factor-like 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]