PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_1070DBD71.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 165aa    MW: 18897.1 Da    PI: 10.4366
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_1070DBD71.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.6e-063554120
                           EEETTTTEEESSHHHHHHHH CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                           ++Cp C k+F+r  n++ H+
  Traes_7AL_1070DBD71.1 35 FSCPVCYKTFNRYNNMQMHM 54
                           89*****************9 PP
2zf-C2H215.74.3e-05119141123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            + C +Cgk F  + + ++H +++
  Traes_7AL_1070DBD71.1 119 FMCRKCGKAFAVRGDWRTHEKNC 141
                            89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-53157No hitNo description
PROSITE profilePS501579.7433562IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-63554IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.453557IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
SuperFamilySSF576675.98E-7102139No hitNo description
Gene3DG3DSA:3.30.160.603.5E-6115139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549119139IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808119139IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MALGVGCASL GIGRLTKGQY WIPTPSQILI GPTQFSCPVC YKTFNRYNNM QMHMWGHGSQ  60
YRKGPESLRG TQPTAMLRLP CYCCAAGCRN NVDHPRARPL KDFRTLQTHY KRKHGIKPFM  120
CRKCGKAFAV RGDWRTHEKN CGKLWYCACG SDFKHKRSLK DHIRA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3698740.0AK369874.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2100E06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149153.11e-124zinc finger protein WIP2-like
SwissprotQ9SVY11e-109ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A3B6SQE81e-122A0A3B6SQE8_WHEAT; Uncharacterized protein
TrEMBLA0A3B6TVS51e-122A0A3B6TVS5_WHEAT; Uncharacterized protein
TrEMBLA0A446YQC21e-122A0A446YQC2_TRITD; Uncharacterized protein
TrEMBLA0A453SKH71e-122A0A453SKH7_AEGTS; Uncharacterized protein
STRINGMLOC_65351.21e-122(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-112C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]