PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DS_C59B6322F.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HSF | ||||||||
Protein Properties | Length: 432aa MW: 47466.4 Da PI: 4.972 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 94.4 | 1.2e-29 | 1 | 85 | 9 | 101 |
HHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 9 iledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 +++d++++ ++sws ++ +sfvv+++ efa ++Lp yFkhsnf+SF+RQLn+YgF+k++ e+ weF +++F kg+k+ll+ Traes_6DS_C59B6322F.1 1 MVDDPATDAVVSWSdASDTSFVVWNSPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPER---------WEFGNEYFVKGQKHLLK 79 899***********76679****************************************999.........***************** PP XXXXXX CS HSF_DNA-bind 96 kikrkk 101 +i r+k Traes_6DS_C59B6322F.1 80 NIYRRK 85 ****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.8E-30 | 1 | 84 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.4E-45 | 1 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.8E-26 | 1 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.44E-28 | 1 | 84 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.9E-9 | 33 | 45 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 34 | 58 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.9E-9 | 46 | 58 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MVDDPATDAV VSWSDASDTS FVVWNSPEFA ARLLPAYFKH SNFSSFIRQL NTYGFRKIDP 60 ERWEFGNEYF VKGQKHLLKN IYRRKPIHSH SHQPGALPDN ERSFFEDEID RLAREKANLQ 120 AELWKSKQQE SGTMFQIEAL ERRAVDMEQR QGKMIAFLQQ ASKNPHFVGK LVKMAEASSM 180 FADALHKKRR LSGLDYAVEA TETASFCDDH SATSRQEMGN LLNQHFSDKL KLGLCSAATE 240 SNLVTLSTQS SHEDNCSPHG RHPPGHDGMG TGGLPLVPQM MELSDTGTSI CPSKSSFFTP 300 AVNDEGLSPC HLSLTLASCS MDVDRGQASN ADGGTTVDEG SDNPPEATAT AFGGNQRASV 360 DAGTAEALTA REDTRVAAEP AAPVKANDNF WEQFLTERPG DASSGPRDPS MDKGQTEGGE 420 KDDREDTEQL KL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-19 | 1 | 84 | 36 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-19 | 1 | 84 | 36 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-19 | 1 | 84 | 36 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355564 | 0.0 | AK355564.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1022K17. | |||
GenBank | AK357504 | 0.0 | AK357504.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1055A05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200706.1 | 0.0 | heat stress transcription factor A-5 | ||||
Swissprot | Q6K6S5 | 0.0 | HSFA5_ORYSJ; Heat stress transcription factor A-5 | ||||
TrEMBL | A0A3B6QAY5 | 0.0 | A0A3B6QAY5_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453N7B3 | 0.0 | A0A453N7B3_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6DS_C59B6322F.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9000 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 1e-102 | HSF family protein |
Publications ? help Back to Top | |||
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