PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6DS_C4D93239C.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 275aa MW: 30092.9 Da PI: 9.0709

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6DS_C4D93239C.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.4	5.6e-40	8	85	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC ++l +akeyhr+h+vCe+h+k p v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+ Traes_6DS_C4D93239C.1 8 RCQVEGCGVELRDAKEYHRKHRVCEAHTKFPRVVVAGQERRFCQQCSRFHALSEFDQKKRSCRRRLSDHNARRRKPQP 85 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	8.0E-33	4	70	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.975	6	83	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.54E-39	7	88	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.1E-31	9	82	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
GGGGGGVRCQ VEGCGVELRD AKEYHRKHRV CEAHTKFPRV VVAGQERRFC QQCSRFHALS 60 EFDQKKRSCR RRLSDHNARR RKPQPDAFSF APARLPSSLM FDDRRQISFV WNKDPSHARP 120 FPCSPWDSPS DFKLPQVKEI REVSINGQVH FDKSHLPNAV PALSHDIAEL LPMKGPDASV 180 TASKLGGAPD LQHALSLLSA SSCGLPDPVQ QASCLVQFTG ASQNSRGPSP HGGSPPSASC 240 AEGQPMVPSP QFVRFTMDGA SSGYESTFFG VNRMN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	9e-27	3	82	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	81	KKRSCRRRLSDHNARRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361610	0.0	AK361610.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1144O20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020186598.1	0.0	squamosa promoter-binding-like protein 4
Swissprot	Q653Z5	7e-91	SPL11_ORYSJ; Squamosa promoter-binding-like protein 11
TrEMBL	A0A3B6QFM1	0.0	A0A3B6QFM1_WHEAT; Uncharacterized protein
TrEMBL	A0A453NJA3	0.0	A0A453NJA3_AEGTS; Uncharacterized protein
STRING	Traes_6DS_C4D93239C.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6271	29	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	1e-37	squamosa promoter binding protein-like 2

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]