PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 275aa MW: 30629.9 Da PI: 6.1805

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6DL_FDFCBA57D.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+ll+ +v+q G g+W+++a+ g++R++k+c++rw +yl Traes_6DL_FDFCBA57D.1 15 KGPWTAQEDKLLLGYVRQQGDGRWNSVAKLTGLKRSGKSCRLRWVNYL 62 79********************************************97 PP
2	Myb_DNA-binding	51	3.3e-16	68	112	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ ++++++++G++ W+tIar ++ gRt++++k++w+++ Traes_6DL_FDFCBA57D.1 68 RGKITPQEESVILELHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 112 8999****************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.911	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	5.24E-29	13	109	IPR009057	Homeodomain-like
SMART	SM00717	2.4E-13	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	8.0E-16	15	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.8E-23	16	69	IPR009057	Homeodomain-like
CDD	cd00167	2.93E-10	17	62	No hit	No description
PROSITE profile	PS51294	24.933	63	117	IPR017930	Myb domain
SMART	SM00717	4.5E-15	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	5.8E-14	68	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.9E-24	70	115	IPR009057	Homeodomain-like
CDD	cd00167	1.69E-10	72	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MEQFGWGREE GGWRKGPWTA QEDKLLLGYV RQQGDGRWNS VAKLTGLKRS GKSCRLRWVN 60 YLRPDLKRGK ITPQEESVIL ELHALWGNRW STIARSLPGR TDNEIKNYWR THFKKGKPSS 120 KNIERARARF LKQRREIMQG HHEHQRDVQD DDGAATADNT GGGAASHHAD EATTRPAPPP 180 AQDDDDLAMM RDMADMDEFL QYDHHPMSMS AYFLLDGGDG AASDAGSSGE ITTCGATWGS 240 LWNLDDVDVV DDVGGGGACG WGSFALLQDH GLAFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-25	15	115	7	106	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK099283	1e-143	AK099283.1 Oryza sativa Japonica Group cDNA clone:J023132O17, full insert sequence.
GenBank	AK111807	1e-143	AK111807.1 Oryza sativa Japonica Group cDNA clone:J013104N22, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020172671.1	0.0	transcription factor MYB57-like
TrEMBL	A0A3B6QFD8	0.0	A0A3B6QFD8_WHEAT; Uncharacterized protein
STRING	Traes_6DL_FDFCBA57D.1	0.0	(Triticum aestivum)
STRING	Traes_6DL_FDFCBA57D1.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3243	35	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13480.1	1e-65	myb domain protein 79

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]