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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Traes_6BL_8E4A831B6.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
| Family |
MYB |
| Protein Properties |
Length: 141aa MW: 16658.1 Da PI: 11.4545 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Traes_6BL_8E4A831B6.1 | genome | IWGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ed+ll+ +v+q G g+W+++a+ g++R++k+c++rw +yl
Traes_6BL_8E4A831B6.1 15 KGPWTAQEDKLLLGYVRQQGEGRWNSVAKLTGLKRSGKSCRLRWVNYL 62
79********************************************97 PP
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| 2 | Myb_DNA-binding | 52.7 | 1e-16 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+ T++E+ ++++++++G++ W+tIar ++ gRt++++k++w+++
Traes_6BL_8E4A831B6.1 68 RGKITPQEESVILELHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 112
8999******************.*********.************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 141 aa
Download sequence Send
to blast |
MEQFGWGREE GGWRKGPWTA QEDKLLLGYV RQQGEGRWNS VAKLTGLKRS GKSCRLRWVN 60
YLRPDLKRGK ITPQEESVIL ELHALWGNRW STIARSLPGR TDNEIKNYWR THFKKGKPSS 120
KNIERARARF LKQRREIMQG H
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. {ECO:0000305}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK099283 | 1e-134 | AK099283.1 Oryza sativa Japonica Group cDNA clone:J023132O17, full insert sequence. |
| GenBank | AK111807 | 1e-134 | AK111807.1 Oryza sativa Japonica Group cDNA clone:J013104N22, full insert sequence. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Brenchley R, et al.
Analysis of the bread wheat genome using whole-genome shotgun sequencing.
Nature, 2012. 491(7426): p. 705-10
[PMID:23192148] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Nishida S,Kakei Y,Shimada Y,Fujiwara T
Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
Plant J., 2017. 91(4): p. 741-753
[PMID:28586097] - Imran QM, et al.
Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
Sci Rep, 2018. 8(1): p. 771
[PMID:29335449]
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