PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6BL_7462E6F9B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRF | ||||||||
Protein Properties | Length: 71aa MW: 8043.33 Da PI: 10.1182 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 27.8 | 4.3e-09 | 56 | 71 | 1 | 16 |
WRC 1 daepgrCrRtDGKkWR 16 ++epgrCrRtDGKkWR Traes_6BL_7462E6F9B.1 56 EPEPGRCRRTDGKKWR 71 69*************9 PP | |||||||
2 | QLQ | 39.6 | 1.6e-14 | 1 | 26 | 12 | 37 |
QLQ 12 ksQilAyKyLaanqPvPpeLlqaiqk 37 ++Q+l+y+y+aa++PvP +L+++i+k Traes_6BL_7462E6F9B.1 1 EHQVLIYRYFAAGAPVPVHLVLPIWK 26 8************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08880 | 1.3E-7 | 1 | 25 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 17.173 | 1 | 26 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 12.665 | 56 | 71 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 71 aa Download sequence Send to blast |
EHQVLIYRYF AAGAPVPVHL VLPIWKSVAA SSFGPHRFPS LIGLGSLCFD YRSSMEPEPG 60 RCRRTDGKKW R |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP099737 | 1e-91 | FP099737.1 Phyllostachys edulis cDNA clone: bphyst023e19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180427.1 | 7e-47 | growth-regulating factor 10-like | ||||
Swissprot | Q6EPP9 | 7e-44 | GRF10_ORYSJ; Growth-regulating factor 10 | ||||
TrEMBL | A0A1D6ARX7 | 1e-45 | A0A1D6ARX7_WHEAT; Growth regulating factor 7-B1 | ||||
TrEMBL | A0A1D6DHE1 | 1e-45 | A0A1D6DHE1_WHEAT; Growth regulating factor 7-A1 | ||||
TrEMBL | A0A446WHB0 | 1e-45 | A0A446WHB0_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A453PA07 | 2e-45 | A0A453PA07_AEGTS; Uncharacterized protein | ||||
STRING | MLOC_80060.1 | 3e-46 | (Hordeum vulgare) | ||||
STRING | Traes_6BL_7462E6F9B.1 | 3e-46 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6221 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 2e-16 | growth-regulating factor 3 |
Publications ? help Back to Top | |||
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