PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_A42E71A00.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 619aa    MW: 67064.3 Da    PI: 6.5692
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_A42E71A00.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.65.9e-28199252155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl
  Traes_6AS_A42E71A00.1 199 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 252
                            79*******************.********************************8 PP
2Response_reg79.89.1e-27211291109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl vdD+p+ +++l+++l++ +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge +++
  Traes_6AS_A42E71A00.1  21 VLAVDDDPTCLKVLENLLRRCDY-HVTTTGQAATALRMLRENKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTV 106
                            799********************.***************888889*******************87754.558*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                             + +  Ga d+l Kp+  e+l +
  Traes_6AS_A42E71A00.1 107 MKGITHGACDYLLKPVRLEQLKT 129
                            ********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.7E-1841619IPR017053Response regulator B-type, plant
SuperFamilySSF521724.84E-3618139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.5E-4318166No hitNo description
SMARTSM004482.9E-3319131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.90520135IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.4E-2421130IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.69E-2922135No hitNo description
PROSITE profilePS5129411.189196255IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-29196257IPR009057Homeodomain-like
SuperFamilySSF466896.63E-20197256IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-24199252IPR006447Myb domain, plants
PfamPF002492.2E-6201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MTVEGRVGGG GKDKFPVGMR VLAVDDDPTC LKVLENLLRR CDYHVTTTGQ AATALRMLRE  60
NKDQFDLVIS DVHMPDMDGF KLLELVGLEM DLPVIMLSAN GETQTVMKGI THGACDYLLK  120
PVRLEQLKTI WQHVIRRNTK NRGSDNDDAG QKGPNAEGEN GGANRNKRQS RRDRDDNGDD  180
GDDSDENSND NGDSSSQKKP RVVWSVELHR KFVAAVNQLG IDKAVPKKIL DLMNVENITR  240
ENVASHLQKY RLYLKRMSMD ASRQANLVAA LGGRNPAYSN MNSMDVFRHY NNAYGRYRPV  300
PTSSHSQSNN LVARMNSPSA YGMHGLLSPQ SQPLHLGHAQ NNLGTSLNDL GVNNGNLIRG  360
AHMSTMGTGT SGNSFANISN GAPLATTNRA VQSLESNNRQ HLGRINSSST DSFSSFASDS  420
PHFPDLGRSS NTWQTAVPSN IQQLGQNGSM SQASLHGNGP RMEPVSSYTP PSNQITSLGN  480
DMQNQVAPLA SNTLPMVFNQ GAAPFTFGNS TNSREALNSN LAFSNSGINT SLPNLCIDNS  540
VVPRQTLDGG NTGGVPSLQD GKIDQQAVGN QLNYNNNDLV GTSGLQRELS GGLDDIVVDM  600
FRPDNDNGGI FIDTDWGLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-25195258164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3637600.0AK363760.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2018L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158305.10.0two-component response regulator ORR24
SwissprotQ6H8050.0ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A3B6NLH90.0A0A3B6NLH9_WHEAT; Two-component response regulator
TrEMBLA0A446V9A70.0A0A446V9A7_TRITD; Two-component response regulator
STRINGTraes_6AS_A42E71A00.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-107response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]