PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6AL_857D5AAEB.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NF-YB | ||||||||
Protein Properties | Length: 246aa MW: 26276.3 Da PI: 6.697 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 169.5 | 4e-53 | 29 | 125 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 vreqdr++Pianv+rim++vlP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa++ lGf+dyvepl++yl+ Traes_6AL_857D5AAEB.1 29 VREQDRLMPIANVIRIMRRVLPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSRLGFDDYVEPLSIYLH 116 69************************************************************************************** PP NF-YB 89 kyrelegek 97 ++re+ege Traes_6AL_857D5AAEB.1 117 RFREFEGEA 125 ******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.3E-49 | 26 | 135 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.64E-38 | 32 | 137 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.8E-25 | 36 | 99 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.0E-16 | 63 | 81 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 66 | 82 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.0E-16 | 82 | 100 | No hit | No description |
PRINTS | PR00615 | 2.0E-16 | 101 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MDMGFPGAAN GAAAAAAGNG GGGGQAPAVR EQDRLMPIAN VIRIMRRVLP PHAKISDDAK 60 ETIQECVSEY ISFITGEANE RCQREQRKTI TAEDVLWAMS RLGFDDYVEP LSIYLHRFRE 120 FEGEARGAGA GHHHHGMPPM MLKPRGAPGP MVPHGDMQMH AAGMYGGGAM PPHPHHPFHM 180 PPHHGQYPQY EMYGGEHGMA AYYGGPYAPG NGGNNGDGSG SSGNGHGGES TPPGGNFEHH 240 QTFGYK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 6e-61 | 28 | 120 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT726906 | 0.0 | KT726906.1 Hordeum vulgare cultivar Hua30 nuclear factor Y B subunit (HIPP1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175578.1 | 1e-177 | nuclear transcription factor Y subunit B-3-like | ||||
TrEMBL | A0A3B6NTD3 | 1e-177 | A0A3B6NTD3_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446VM52 | 1e-177 | A0A446VM52_TRITD; Uncharacterized protein | ||||
STRING | Traes_6AL_857D5AAEB.1 | 1e-178 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 2e-55 | nuclear factor Y, subunit B6 |
Publications ? help Back to Top | |||
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