PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DS_443F1993A.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NF-YA | ||||||||
Protein Properties | Length: 342aa MW: 37021.6 Da PI: 8.744 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 99.7 | 2.9e-31 | 177 | 233 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVNaKQy++Il+RR +Rak+e+e++l k+rkpylheSRh hA+rR+RgsgGrF Traes_5DS_443F1993A.2 177 DAPIYVNAKQYEGILRRRRARAKAEKENRL-VKARKPYLHESRHLHAMRRARGSGGRF 233 68****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.8E-35 | 175 | 236 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.01 | 176 | 236 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.8E-28 | 179 | 233 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.3E-23 | 179 | 201 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 181 | 201 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.3E-23 | 210 | 233 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MMSFKNHHEG FAGQQLLAAA AAAASQASGG APLPWWVGSQ LLYGEPMGHG KAPPAVPMSM 60 SPPEDACRDG QFQVVPRAQA LLDAVPLPQP PMGERGIPEA LKFSMAHGKG GNSSEHSAPI 120 TLQSPFTEYN DHFELGLGQS VISSNYYSDQ QYGLLSSYGM RSASSGRMLI PLNMPADAPI 180 YVNAKQYEGI LRRRRARAKA EKENRLVKAR KPYLHESRHL HAMRRARGSG GRFLNTKKET 240 NGKDTGVGSK AMVGNPLMRS AASLSSEIQH SEQGNPSSVS SLSGSEVTSL YDHEDVDHYH 300 NFEHLRTHFF TPLPSIMDGE HGAGNPFKWA AASDGCCNLL KA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-17 | 177 | 241 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM078758 | 0.0 | KM078758.1 Triticum aestivum CCAAT-binding transcription factor B (NFYA-D6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188697.1 | 0.0 | nuclear transcription factor Y subunit A-2-like | ||||
Refseq | XP_020188698.1 | 0.0 | nuclear transcription factor Y subunit A-2-like | ||||
Refseq | XP_020188699.1 | 0.0 | nuclear transcription factor Y subunit A-2-like | ||||
Refseq | XP_020188700.1 | 0.0 | nuclear transcription factor Y subunit A-2-like | ||||
Refseq | XP_020188701.1 | 0.0 | nuclear transcription factor Y subunit A-2-like | ||||
TrEMBL | A0A3B6MJ04 | 0.0 | A0A3B6MJ04_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5DS_443F1993A.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2307 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05690.1 | 1e-28 | nuclear factor Y, subunit A2 |
Publications ? help Back to Top | |||
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