PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_F8AEA5040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 211aa MW: 23111.8 Da PI: 5.7636 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 164 | 183 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + Cp C k+Fsr nL+ H+ Traes_5DL_F8AEA5040.1 164 FACPVCCKTFSRYNNLQMHM 183 78*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.81E-6 | 155 | 186 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.3E-7 | 164 | 183 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.284 | 164 | 191 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 166 | 186 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MSNPYTFLRP HIDRPFFPFQ RSLVSPSSPP KQALPLLSLL PSSHDHSKIF GCGYAGDDDH 60 HQLKKEDEDV NISLQIGPAN PNPAPNLLRS TVSDGGCDDA TGTAQDQCGG GDHSRANEQE 120 EVEDDDDDAA GDGLCLEYFA AGKLTKGKYW IPTPAQILIG PTHFACPVCC KTFSRYNNLQ 180 MHMWGHGSQY RRGPDSLRGT QPAAMLRLPC F |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK359410 | 0.0 | AK359410.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1096E11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169205.1 | 1e-155 | zinc finger protein WIP2-like | ||||
TrEMBL | A0A3B6MQH8 | 1e-154 | A0A3B6MQH8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453KJN3 | 1e-154 | A0A453KJN3_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5DL_F8AEA5040.1 | 1e-157 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP586 | 38 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 4e-38 | C2H2 family protein |
Publications ? help Back to Top | |||
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