PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_E4A6D1889.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 366aa    MW: 39603.5 Da    PI: 7.5335
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_E4A6D1889.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.7e-31187245259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp++++itY+ eHnh+
  Traes_5DL_E4A6D1889.2 187 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERSRSDPNMLVITYTAEHNHP 245
                            699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.315181247IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-30184247IPR003657WRKY domain
SuperFamilySSF1182902.75E-26185247IPR003657WRKY domain
SMARTSM007748.6E-38186246IPR003657WRKY domain
PfamPF031062.1E-25188245IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDMKEQANAA ATAAREGDLA DVVARANAMA YSTGARRQAP PPPPSAAARV MIPYEEERQR  60
RPANVACGGG EVTFEAPPST VVVDPYLLAA AGGYGLPQQH QHQHQQLLAF QISEHACCAA  120
ADSDDPMRIS PPPPQPAPHH QMITSYCGMA CTHIPYCRKN DVRKVVCIPA PPVMSNRAGG  180
GGEVIPSDLW AWRKYGQKPI KGSPYPRGYY RCSSSKGCLA RKQVERSRSD PNMLVITYTA  240
EHNHPWPMQR NVLAGYARAH THAAAKKQQK ISSSSSADNA ASSSSINSFH VEQINPICVD  300
QLPVSCKMPD STATAGDGGG LLFEGIQPDE VFAELEELET HNNPVMTSAN VYGSRGVSSN  360
YEWHKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-23159247279Disease resistance protein RRS1
5w3x_D3e-23159247279Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097953e-71AK109795.1 Oryza sativa Japonica Group cDNA clone:002-147-E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177194.10.0probable WRKY transcription factor 14
SwissprotQ9SA801e-52WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A3B6N4I10.0A0A3B6N4I1_WHEAT; Uncharacterized protein
STRINGTraes_5DL_E4A6D1889.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134662832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-53WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]