PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_5DL_743B870D9.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 284aa MW: 30187.3 Da PI: 5.7192 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 40.3 | 6.7e-13 | 97 | 148 | 5 | 56 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 + rrkq+NRe+ArrsR RK a + eLe v +L eN++L +l ++++ Traes_5DL_743B870D9.1 97 RLRRRKQSNRESARRSRSRKAAHLNELEAQVSQLRVENSSLLRRLADVNQKY 148 5679*************************************99998877766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.0E-18 | 93 | 157 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.6E-10 | 94 | 148 | No hit | No description |
PROSITE profile | PS50217 | 11.438 | 95 | 149 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.0E-9 | 97 | 148 | No hit | No description |
Pfam | PF00170 | 1.9E-10 | 97 | 147 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 2.8E-44 | 164 | 277 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 284 aa Download sequence Send to blast |
MWRASGAMPP ERFAASPSLP NADVQHIGTI NPIGGNVVPV QNKLAGGASG VSGPHLVQNA 60 DALVKQAASS SSREQSEDDD MEGEDEITGN GPPTDQRLRR RKQSNRESAR RSRSRKAAHL 120 NELEAQVSQL RVENSSLLRR LADVNQKYNG AAVDNRVLKA DVETLRAKVK MAEDSVKRVT 180 GMSALFPAGS DMSSLSMPFT GSPSEATSDA AVPDDLSAYF STSEAGGNGY MPEMASSAQE 240 DDNFLNEAMD TGKMGRPDSL HRVASLEHLQ KRMCGGPASS GSTS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK360603 | 0.0 | AK360603.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1121N05. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172895.1 | 0.0 | light-inducible protein CPRF2-like | ||||
Swissprot | Q7X9A8 | 1e-134 | RSBZ2_ORYSJ; bZIP transcription factor RISBZ2 | ||||
TrEMBL | A0A3B6MZG2 | 0.0 | A0A3B6MZG2_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5DL_743B870D9.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3488 | 38 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28770.1 | 2e-34 | bZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|