PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_230E818AD.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bZIP | ||||||||
Protein Properties | Length: 339aa MW: 36982.4 Da PI: 7.0125 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.5 | 2.1e-11 | 140 | 198 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l+ l+ + l+se+ Traes_5DL_230E818AD.2 140 KRAKRIWANRQSAARSKERKMRYIGELERKVQTLQTEATTLSAQLSLLQRDTSGLTSEN 198 9************************************************9999999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.6E-17 | 136 | 200 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.909 | 138 | 201 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.95E-11 | 140 | 191 | No hit | No description |
Pfam | PF00170 | 5.3E-10 | 140 | 198 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 5.8E-10 | 140 | 196 | No hit | No description |
CDD | cd14703 | 2.55E-23 | 141 | 190 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MPDFPTRNPG HRRAHSEILS LPDDLDLCAP GGGDGPSLSD ENDEELFSMF LDVDKLNSSC 60 GPSSDQAESS SAAAAGGGEA ARAGHVMRPK HQHSQSMDES MSIKAEDLVG APGMEGMSTV 120 EAKKAVSAAK LAELALVDPK RAKRIWANRQ SAARSKERKM RYIGELERKV QTLQTEATTL 180 SAQLSLLQRD TSGLTSENSE LKIRLQNMEQ QVHLQDALND TLKTEVQRLK VATGQMGNGG 240 GMLMNYGGMS QAPHQFGGSQ QMFHSNQSMQ SLLATHQLQQ LQLHQQPQQQ QQPMRPQHHQ 300 QQQQPLHPLQ AQQFQQAARD LKMKGPMWGD GKSPGGGGI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356433 | 0.0 | AK356433.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1034M13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020146433.1 | 0.0 | transcription factor RF2a-like | ||||
Refseq | XP_020146434.1 | 0.0 | transcription factor RF2a-like | ||||
Swissprot | Q69IL4 | 1e-142 | RF2A_ORYSJ; Transcription factor RF2a | ||||
TrEMBL | A0A3B6MV68 | 0.0 | A0A3B6MV68_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453LBI3 | 0.0 | A0A453LBI3_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5DL_230E818AD.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4269 | 38 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06070.1 | 1e-96 | bZIP family protein |